Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01710 ATGGATTTGGTAGCTGGTGTTAAGGAAAAATTGACATATTTCCGTATAAAAGAGCTCAAAGATGTGCTGACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGACCTCGTCGATAGGATTTTGTCCATTATCTCAGATGAACAAGTATCCAAAATGTGGGCTAAGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGATGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGTCAGGCTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGAGGAGTCCTTTCAAATTCAATCAGCTACAAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGAGGATTTGATCAAGTGTGATGATGCAAAATGTCAAGTGTGGCAACACATAAGTTGCGTTATTATTCCGGAGAAACCTATGGAAGGCATCCCGCCAGTCCCTGATAAATTTTATTGTGAAATATGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAGTATCTCATCCTTTATTACCTGTGAAGTTGACCACAACCAGTATTCCAACTGACGGTACCAACCCAGTGCAGTGTGTGGAGAGAACATTTCAACTCACAAGAGCAGACAGGGACATGGTATCAAAGCAAGAGTTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGATAAGGTTCCATTTAGGATGCAATGGCCACAGTATACAGACCTAGCAATCAATGGTCTTCCTGTTCGAACAACTAACAGACCCGGTTCACAATTGCTTGGGGCTAATGGCCGTGATGATGGTCCAATTATCACACCGCATACAAAAGATGGAATGAATAAGATTTCATTAACAGTATGTGATCCTCGCATTTTTTGTTTAGGTGTTCGCATTGTTAGAAGGCGCAGTTTGCAACAGATCCTAAACTCAATTCCGAAGGAGCCTGACGGTGAGCCTTTTGAAGATGCTCTTGCACGCGTTTGTCGTTGTGTTGGTGGTGGAAATGCAGCTGACAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTTAAACCTTGCATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGACCCTTATTTCAATCGCATCACTTCTAAGATGATTAATTGCAGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGGCAAAAAGTGAAAATGAACGTTTCGATTTAGGGAGTCTTGGACAATGGCACTCTCCTGATGGATCACTCTGTGCTTCTACTGATGGAGATATCAAAAGAGTAGAAACACTGAAGCAAGTAAAACAGGAGGGTTTTTCAGACGGACCTGCTGGTTTAAAACTTGGCATTAGGAAGAATCGCAATGGAATTTGGGAAGTCAGTAAGCCCGAGGACACAAACACCTCTTCTGGTCATAGATTAAAAGAGGTTTTTGGAAATCCTGAGCATGTTGTTATTCCAATGAGCAGCAGTGGCACCGGAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGGCATGTTGATTATTCTACTACCAATGGAATTGAGATGGATTCTCTGTCCCTCAATAATGTTGATTTAGCTCAGGGATATACTGCACTTAACACATCTACTCAGGTGGGTGGTGCAGAAGTAATTGTTCTTAGCGACTCTGATGAAGAAAATGATATATTGGTGTCTCCTGCTATTGCAAATAACAGCAACCAAAATGATACTGCAGATGGTTACTCCATGCCACCGCCTGTAATGGTTGACCCATTTGCTGAAGATCCGAATCTTGGTGGAAATCCATGCTTGGGGCTTTTTCATAATGATGATTTTGGAATGTCTTCCATGTGGTCGTTGTCTTCTGCAACTCAGGCTGCTCCAGGATTCCAATTGTTTGACTCTGATGCAGATGTATCTGATGCATTGGTCCATCTGCAGCATGGTCCTAGTAATGGTACCTCACCATTAAATGGTTATACATTGGCTCCCGAAACTACTTTGGGATCTAGTAGTCTCTTACATGATTCCTCTGTCGGTCGGTCAGATGCCGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTAATGGAGATGATCCCTCACTTAAGATTTTTCTTCCAACAAGACCGGCTGAGTCATCTATGCAGAATGAATTGAGAGATCAAGCAAATCTATCCAATGGTGTCTGCACTGAAGATTGGTTTTCCCTTTCTCTTGGAGGTGGTGCTGGCAGCAGTAACGGCGCTTCCACTCAAAATGGATTGGATTCTAGACATCAAGTCCCAGCCAGAGACAATGGCACAAATAATTTGGCTGATACTGCTTCTTTGCTTCTTGGCATCAATGATGTGAGATCTGACAAAGCAGCTAAACAAAGGCCAGGTAGCCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCAGATTCAGAATAA 2637 0.4281 MDLVAGVKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSIISDEQVSKMWAKKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQAVSDSSNVKVKAEVEESFQIQSATKIRCLCGSTLETEDLIKCDDAKCQVWQHISCVIIPEKPMEGIPPVPDKFYCEICRLSRADPFWVSVSHPLLPVKLTTTSIPTDGTNPVQCVERTFQLTRADRDMVSKQEFDVEAWCMLLNDKVPFRMQWPQYTDLAINGLPVRTTNRPGSQLLGANGRDDGPIITPHTKDGMNKISLTVCDPRIFCLGVRIVRRRSLQQILNSIPKEPDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSKMINCSEDVTEVEVKPDGSWRVKAKSENERFDLGSLGQWHSPDGSLCASTDGDIKRVETLKQVKQEGFSDGPAGLKLGIRKNRNGIWEVSKPEDTNTSSGHRLKEVFGNPEHVVIPMSSSGTGSGRDGDDPSVNQGGGGHVDYSTTNGIEMDSLSLNNVDLAQGYTALNTSTQVGGAEVIVLSDSDEENDILVSPAIANNSNQNDTADGYSMPPPVMVDPFAEDPNLGGNPCLGLFHNDDFGMSSMWSLSSATQAAPGFQLFDSDADVSDALVHLQHGPSNGTSPLNGYTLAPETTLGSSSLLHDSSVGRSDADLNGGLVDNPLAFNGDDPSLKIFLPTRPAESSMQNELRDQANLSNGVCTEDWFSLSLGGGAGSSNGASTQNGLDSRHQVPARDNGTNNLADTASLLLGINDVRSDKAAKQRPGSPFTFPRQKRSVRPRLYLSIDSDSE 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01710 878 CDD SP-RING_Siz-like 362 411 IPR031141 -
Trre8g01710 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 173 IPR013083 -
Trre8g01710 878 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Trre8g01710 878 SUPERFAMILY SAP domain 1 64 IPR036361 -
Trre8g01710 878 Pfam PHD-finger 116 168 IPR019787 -
Trre8g01710 878 MobiDBLite consensus disorder prediction 803 828 - -
Trre8g01710 878 SUPERFAMILY FYVE/PHD zinc finger 108 171 IPR011011 -
Trre8g01710 878 ProSiteProfiles Zinc finger SP-RING-type profile. 348 431 IPR004181 GO:0008270
Trre8g01710 878 ProSitePatterns Zinc finger PHD-type signature. 117 167 IPR019786 -
Trre8g01710 878 FunFam E3 SUMO-protein ligase SIZ2 335 449 - -
Trre8g01710 878 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 663 - -
Trre8g01710 878 Gene3D SAP domain 1 62 IPR036361 -
Trre8g01710 878 SMART sap_9 11 45 IPR003034 -
Trre8g01710 878 MobiDBLite consensus disorder prediction 543 567 - -
Trre8g01710 878 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Trre8g01710 878 Pfam MIZ/SP-RING zinc finger 361 409 IPR004181 GO:0008270
Trre8g01710 878 MobiDBLite consensus disorder prediction 846 878 - -
Trre8g01710 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 449 IPR013083 -
Trre8g01710 878 Pfam SAP domain 14 42 IPR003034 -
Trre8g01710 878 CDD PHD_Bye1p_SIZ1_like 116 167 - -
Trre8g01710 878 SMART PHD_3 116 168 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01710 Trre-Chr8 13447778 13458886 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre8g01710 PHD 5.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01710 - - gmx:100793735 1446.41