Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01705 ATGGAAATTGATCTGAATCATGAAGTGACTGAAATTGACAAGAATGCATTGTGTATTAAGGAATGTGAAAAAGGTTGTTGTTTGTCCCCTTCAAATTGTTCAACTAATTCACCACTTGTTTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCTCTTATTTCACTTCCTAAGAAAGGAAATATTGTTGTTTATTTTCCACAAGGTCACTTAGAACAATTTTCTTCTTTTTCTCCTTTTAAACCATTGGAGATACCAACTTATGATCTTCAGCCTCAGATCTTTTGTAGGGTTGTCAATATTCAGCTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAAGCTGAGTTTGCAGAGATGCATATGGAGGGAAAAGAAGTTGAGGAATTAGAAGGCGATGAAGAAGGAGACGGAGGGTCACCTACAAAATCAACTCCTCACATGTTCTGCAAGACACTAACTGTCTCTGATACCAGCACTCATGGTGGATTCTCTGTGCCTCGTAGAGCTGCTGAAGACTGTTTTCCACCTTTGGATTATAAGCTGCAGAGACCTTCTCAAGAGCTTATTGCCAAAGATCTGCATGGTGTGGAGTGGAAATTTCGACATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGATGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGAGTGAAAATGGAGAGCTGAGATTAGGAATCAGAAGAGCTATTAGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGAAACCAAAACTGTTATCCAAATTTCCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAATTTGTTGTTCCATATCAAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAACGAGAGTCGAAATGGATGAATCGCCAGAAAGAAGAAGTAGTAGTGGTATGTTGATTGGAATGAATGACTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTAATGGTTAGATGGGATGAAGATATTGAGACTAATCATCAAGACCGAGTATCTCCGTGGGAGATTGATCCTTCTTCTCCTCTTCCTCCCCTAAGTATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCGGTCTGCAGGTTACCTCGCCCAATCACCTCATCACTGGTATCAATCCTAATGGAAGCAGTGGAATGATGGGTTTTGAGGAATCTATAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCCGGTTTTATGTCACTATACTATGGATGTGACAAAAAAACAAACCAGCCAGGTTTTGAGTTGAGCTCTTCAAGTCATCATCAAAACCTTGCATCAACTGGAATAGGAAAAGTAGTTACCTCTTCTGAGCTTATGAGTGTTCATCCTTTCAGTTATGCAGGCTTTATGGAAACTAACAATTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCGATTACGGGAAAAGTTGATTTCAATATTGGTTCTTGGGGAACCAAACCAAATTTTCAATCTGCATATTTTCCTTTTGGAGATATTCACAAAGATAATCAAGTTAACATGTTTAGCACAAAACACACCTCTTTTCTAAGCGATAATGTCGTGTTTAACACACCGACAATAACATTGGCAGGGAACATTAGAAAAGAAGTTAATCTCCCAAGTGAGCATAAGCTGCAGGACAATATAATTGATGCTGCTTCATTAGGGGCTACTAATATAAATGTTGCAAATGATAACAATGCGAAGGGAAAGGTAAATTCGTGCAAATTATTCGGGTTTCCTTTGTCTGGCGAAACTAGTAGCCAGAATACTGCAAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTCGGAAGAGCCATTGATCTGTCAAGGTTGAGCAGCTACATCGATCTTCTAAGTGAACTAGAGAAACTATTTGGAATGGAAGGACTTCTTAGAGATTCTAATAAGGGATGGAGGATCCTCTACACCGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCAAAGAAGAAGTTGAGAAGATGACATTTGGAATGACAAATGATGATACTCATAGCTGTTTGGAACAAGCACCAGTGATTATGGAACCTTCTAAGTCTTCCTCAGTTGGTCAACCAGATTATTCTCCAAAAGTAGTTAGAGTCTAA 2328 0.3952 MEIDLNHEVTEIDKNALCIKECEKGCCLSPSNCSTNSPLVSSSYLELWHACAGPLISLPKKGNIVVYFPQGHLEQFSSFSPFKPLEIPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAEFAEMHMEGKEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRSENGELRLGIRRAIRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPVTIGTRFKTRVEMDESPERRSSSGMLIGMNDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSSPLPPLSIQSSPRLKKPRTGLQVTSPNHLITGINPNGSSGMMGFEESIRSPKVLQGQENAGFMSLYYGCDKKTNQPGFELSSSSHHQNLASTGIGKVVTSSELMSVHPFSYAGFMETNNFPRVLQGQEICKLKSITGKVDFNIGSWGTKPNFQSAYFPFGDIHKDNQVNMFSTKHTSFLSDNVVFNTPTITLAGNIRKEVNLPSEHKLQDNIIDAASLGATNINVANDNNAKGKVNSCKLFGFPLSGETSSQNTAKRSCTKVHKQGSLVGRAIDLSRLSSYIDLLSELEKLFGMEGLLRDSNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMTNDDTHSCLEQAPVIMEPSKSSSVGQPDYSPKVVRV 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01705 775 SUPERFAMILY DNA-binding pseudobarrel domain 150 269 IPR015300 -
Trre8g01705 775 FunFam Auxin response factor 642 736 - -
Trre8g01705 775 Gene3D - 156 260 IPR015300 -
Trre8g01705 775 Gene3D - 322 393 - -
Trre8g01705 775 FunFam Auxin response factor 156 260 - -
Trre8g01705 775 FunFam Auxin response factor 321 394 - -
Trre8g01705 775 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre8g01705 775 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 736 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre8g01705 775 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Trre8g01705 775 Gene3D - 642 736 - -
Trre8g01705 775 SUPERFAMILY CAD & PB1 domains 647 726 - -
Trre8g01705 775 MobiDBLite consensus disorder prediction 136 155 - -
Trre8g01705 775 ProSiteProfiles PB1 domain profile. 647 729 IPR000270 GO:0005515
Trre8g01705 775 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Trre8g01705 775 CDD B3_DNA 156 258 IPR003340 GO:0003677
Trre8g01705 775 SMART B3_2 158 260 IPR003340 GO:0003677
Trre8g01705 775 MobiDBLite consensus disorder prediction 381 426 - -
Trre8g01705 775 MobiDBLite consensus disorder prediction 393 426 - -
Trre8g01705 775 Pfam AUX/IAA family 639 731 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01705 Trre-Chr8 13429368 13433951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01705 40 775 B3 DNA Binding Superfamily AT5G60450 60.292 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre8g01705 AUX_IAA 1.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01705 - - gmx:100783513 1201.81