Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01700 ATGATGTCTAAACAACCCTTTTCAAGTTCATCTCATTCAAACACCATGAAAGCTTCTTCATCAAATCATGTTCAACAATCAAACACAAACCCTAATCCAAACCTACCTAAGAAAAAAAGAAACCTACCAGGAACACCAGATCCAGATTCAGAAGTGGTAGCTATGTCACCAAAGTCATTGATGGCGACAAATCGTTTCTTATGCGAAATCTGCAACAAAGGTTTCCAAAGAGACCAAAATTTGCAGCTTCATCGACGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAAGCAACAAAGATCAAGTTAAAAAGAAAGTTTATGTGTGTCCTGAGAAGAGTTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAATGGAAGTGCGAAAAATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATAGCAAAATTTGCGGAACAAGAGAATACAAATGCGATTGTGGCACTATTTTTTCCAGGAAAGACAGCTTCATAACTCATAGAGCTTTTTGTGATGCATTGACTGAAGAAAGTGGAAAGATAACAACAGTTCCTGCAGCTTTAAGCAACTTTCGTAATGATCATATGACAAACACTCATCAATCTCCAAGAATCCCTCAAATTTTTCCTGGTTTTCAGCTTCACTCAGAATATATCAATTCAGCAACATCATCATCATCATTATGGCATCAAAACCAAGCAAATAATTCTCAGTTACTTCATCAAAATTCTGATATAATGCAAACAATGGATGTGTTTGGATCACAAACACAAACACAGTGGTTGAATAACTATAATGGTATTAATCTATCATTACCAATGTTACATGGAGTAATGAAACAAGAACAAGAACAAGAAGAAAACAAAGATTTGTCTCATAGTGTAATAAGTTCATTGTACTTGAGCCAGAATCAACAAGGTGGATCAAATCACATGTCAGCAACTTCACTGTTACAGAAAGCATCTCAAATTGGATCAACAAGGACAATTATTAGTAATGATAACAACACTGTCTTCAACAATGTGAATCACAGCTTTAACAACATTGTTCATGATGTTCATCAGAAATTTTATAACAAACAAGATGAAAATGTAGAGTTGAATGAGTTGGTAAATGTTGGAGCTGGTGAGTATTTATTTAATGATTCAAATTCAAATAATTTGTTTGGAATTGTGAATGGTACAAAGGATTTGGATCATGTGGTAATGTCGGTGGATAAAGAGACAAGTACAAGACATATACATAGGTTAAAAGAGAAAAATCAAATGGGTTTAACAAGAGATTTTCTTGGGGTTGGAGATGATGATAATGATGATGGTTCAATGAGTAGAACTTTTTTACAGCATGAACTTGGTGAATTTAATGGAATGGGAACATTGGGAAATAATTTGCAGATTCAGTATGGTGGTGGACATTACTGCTAG 1485 0.3488 MMSKQPFSSSSHSNTMKASSSNHVQQSNTNPNPNLPKKKRNLPGTPDPDSEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDQVKKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEESGKITTVPAALSNFRNDHMTNTHQSPRIPQIFPGFQLHSEYINSATSSSSLWHQNQANNSQLLHQNSDIMQTMDVFGSQTQTQWLNNYNGINLSLPMLHGVMKQEQEQEENKDLSHSVISSLYLSQNQQGGSNHMSATSLLQKASQIGSTRTIISNDNNTVFNNVNHSFNNIVHDVHQKFYNKQDENVELNELVNVGAGEYLFNDSNSNNLFGIVNGTKDLDHVVMSVDKETSTRHIHRLKEKNQMGLTRDFLGVGDDDNDDGSMSRTFLQHELGEFNGMGTLGNNLQIQYGGGHYC 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01700 494 MobiDBLite consensus disorder prediction 1 53 - -
Trre8g01700 494 Gene3D Classic Zinc Finger 120 200 - -
Trre8g01700 494 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Trre8g01700 494 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Trre8g01700 494 MobiDBLite consensus disorder prediction 1 36 - -
Trre8g01700 494 SMART c2h2final6 66 88 IPR013087 -
Trre8g01700 494 SMART c2h2final6 108 138 IPR013087 -
Trre8g01700 494 SMART c2h2final6 143 163 IPR013087 -
Trre8g01700 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 464 IPR031140 -
Trre8g01700 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Trre8g01700 494 FunFam protein indeterminate-domain 12-like 45 114 - -
Trre8g01700 494 Gene3D Classic Zinc Finger 45 119 - -
Trre8g01700 494 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01700 Trre-Chr8 13363837 13365893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01700 37 478 IDZ Gene Family AT5G03150 45.629 4.68e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g01700 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01700 K25870 - gmx:100781896 505.753