Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01688 ATGGCTTCTTCCAACAATTCCATAGCAGAAAACAAGAAGAAAACCAAAAAACCACAAACCTCAACACCTACTAGTAAAATCAAAAAGGAAAAATCCAAAGAGAAGAAGAAGAACAACAACAACGAAGAGAACAAAAACAACAACAACAAGAATAAGAAGAAGCTGAATTTCACAAATGGAAATTCCAAAGAAAAAAATGTCAATGGAAAGAAACATCACCAGAACAACAATGACGATGAAGAAAATGAAGAAGAAGCGAAAACGCACGTGTTCCCTATGAATCGAATCAGAACGATTTTAAAAGGAGAAATTAGCGATTTGCGTGTTTCTCAGGAAGCTGTATTGGCTATTAACAAAGCTGCGGAGAAGTTTCTTGAACAATTGGCGCAGGAAGCTTATGTTTGTTCTGTTCAGGATCGTAAGAAATTTCTGAGTTACAATCATCTATCACGTGTTGTTGGTAAGCAAAGAAGATATGACTTTCTGTCTGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGACAAACTTAAGAGGGAATAGAGGAGGTTAG 564 0.3635 MASSNNSIAENKKKTKKPQTSTPTSKIKKEKSKEKKKNNNNEENKNNNNKNKKKLNFTNGNSKEKNVNGKKHHQNNNDDEENEEEAKTHVFPMNRIRTILKGEISDLRVSQEAVLAINKAAEKFLEQLAQEAYVCSVQDRKKFLSYNHLSRVVGKQRRYDFLSDFVPEKVKAEDALRETNLRGNRGG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01688 187 Gene3D Histone, subunit A 75 168 IPR009072 GO:0046982
Trre8g01688 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 91 153 IPR003958 -
Trre8g01688 187 Coils Coil 27 53 - -
Trre8g01688 187 MobiDBLite consensus disorder prediction 10 50 - -
Trre8g01688 187 SUPERFAMILY Histone-fold 71 167 IPR009072 GO:0046982
Trre8g01688 187 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 47 182 - -
Trre8g01688 187 MobiDBLite consensus disorder prediction 65 89 - -
Trre8g01688 187 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01688 Trre-Chr8 13300175 13302140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01688 60 152 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.935 1.04e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre8g01688 CBFD_NFYB_HMF 5.7e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01688 - K03506 lja:Lj3g3v3086110.3 183.341