Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01684 ATGTTAGCTAAGACTCTTTCTTATGTGAAAGATATTTTGACCTGTAACTGCTTCGGGTTTTTAAAGAGAAGGAACCCTCGAAAAAATACGCATATCATCTACAATAGTAATCTCTCCCGTGAGCTGTTGATAGATAGTGATTTTGATGATGATAATGATGAAGATTCCTTCTTTAATGATGAGAATGTTAACAACTCTAGTGGAGATGATGAGGAGGAGCAAAGTCGTCCCAAGCGATCGGAGGAAATTTTGGATTTTAGAGTAGAGAATGGTATGATCTGCAGACAGTTTCCTGTTAAAGAAACTCACAAAATTGACCGTACAGAGGATGAAAATGGAAACAAGGCAGTAAATGAGTATGTTCGTGAGTATAAGATTGGGTCTGGCAGCTATGGGAAAGTGGCACTTTATCGAAGCTCTGTTGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCATTTACTGAAGCTTCGAGTTGCACCCTCAGAAACGGCCATGACTGATGTTCTTCGTGAGGTTTTCATTATGAAAATGCTGCAACATCCTAATATAGTCAATCTCATTGAAGTGATTGATGACCCAGAATCGGATAACTTCTACATGGTACTTGAATATGTAGAGGACAAATGGGTTTGCGATGGTTCTGGCCGAGCTTGTGCCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGACATAGTTTCTGGATTAATGTATCTCCATGCTCATAATATAGTACATGGGGATATCAAACCTGACAATCTGTTGATTACTCGTCATGGTACAGTGAAGATAGGGGATTTCAGTGTCAGTCAGGCTTTTGAGGATGATAATGATATGCTTCGCCGATCACCTGGCACTCCTGTTTTCACTGCACCTGAATGTATTTTAGATATTACTTACAGTGGTAAAGCCGCTGACACATGGGCTGTAGGAGTTACTTTATACTGTATGGTATTGGGTGATTACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAGAGTAGTCAATACTCCGATAGTACTCCCAAAGGATCTGAATCCACGGTTGAAGAACTTGATAGAAGGACTACTTTGCAAAGACCCAAAACAAAGGATGACGCTGGCTGATGTCGCGGCGGATAGCTGGGTTATTGGAAAGGATGGGCCAATTCTTGAGTACCTTTGTTGGTGCAAAAGAAAGAACTTGGTGAAGGAAGACAATGATGAGAGCAAGCTCACCTATACTGGCTGA 1245 0.4088 MLAKTLSYVKDILTCNCFGFLKRRNPRKNTHIIYNSNLSRELLIDSDFDDDNDEDSFFNDENVNNSSGDDEEEQSRPKRSEEILDFRVENGMICRQFPVKETHKIDRTEDENGNKAVNEYVREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVFIMKMLQHPNIVNLIEVIDDPESDNFYMVLEYVEDKWVCDGSGRACALGEETARRYLRDIVSGLMYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDDNDMLRRSPGTPVFTAPECILDITYSGKAADTWAVGVTLYCMVLGDYPFLGDTLQDTYDRVVNTPIVLPKDLNPRLKNLIEGLLCKDPKQRMTLADVAADSWVIGKDGPILEYLCWCKRKNLVKEDNDESKLTYTG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01684 414 FunFam Serine/threonine-protein kinase GRIK2 110 412 - -
Trre8g01684 414 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Trre8g01684 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Trre8g01684 414 ProSiteProfiles Protein kinase domain profile. 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01684 414 Gene3D Phosphorylase Kinase; domain 1 114 215 - -
Trre8g01684 414 CDD STKc_LKB1_CaMKK 126 381 - -
Trre8g01684 414 SUPERFAMILY Protein kinase-like (PK-like) 116 393 IPR011009 -
Trre8g01684 414 MobiDBLite consensus disorder prediction 58 79 - -
Trre8g01684 414 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 70 383 - -
Trre8g01684 414 Gene3D Transferase(Phosphotransferase) domain 1 216 390 - -
Trre8g01684 414 Pfam Protein kinase domain 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01684 414 FunFam Serine/threonine-protein kinase Ssp1 114 216 - -
Trre8g01684 414 SMART serkin_6 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01684 Trre-Chr8 13252143 13255218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01684 115 380 CBL-interacting serine-threonine protein kinases AT5G35410 32.707 4.52e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Trre8g01684 Pkinase 5.7e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01684 K00908 - gmx:100789178 619.772