Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01678 ATGAGTTCTCAAGAAAATAAACATGTCACTCAGAAAGAACATGATGCTGATCATACTACTTCTTGTACAAGAACAGTTTCTCCTCCTGTTGTTCACAAGGATGATGATGATGATCCAATGGGGATAACCGAAGAAACCGCGCATGTTCCGCCAAGGAAGAAACAGAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAGTGTTCACAAGAATTTGTTGCAATCAAAATGCCGATGACACCAAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTAATGACTTCTCGCTCGGTTGATGCTCCGACAAATAATTCTCCTGGATCAGGATCATCAAAAGGCAAATCATCCATAAGAAACTTGCTACCAAAATTGAGTTTTCGGTATAGGACACCAGCAGCAGATACTGAAAAGGCGAATACGCCAACTCCGGATGTTTCCTCTTCAGGTCATCGAGAAAAGCCTTTGATTTCAAGGTCGTTGTCGCTTAGTAAAATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGAAGAAATTGGACATTCGAACCCGGAATCAACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCTTAGTAAAAAAGAGACTCGGCAAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAATAACAACAAGGACAAAAGTATAAGGAGGATGGATTCATTTTTTCGTGTCGTGCCTTCTACTCCTCGAGTAAAGGAAATAAATGAATCTTTGAGCACGTCCCCGACAAAAGATACTGAAGACGAAGATGCTGACGGCGGCGAAGATATAGCCGAAGAAGAGGCAGTGTGTAGAATCTGTTTGGTTGAATTATGTGAAGGAGGTGAGACATTCAAATTGGAATGTAGCTGCAAAGGCGAACTTGCTTTGGCTCACCAGGAATGTGCCATTAAATGGTTTAGTATAAAGGGAAACAAGACATGTGATGTCTGCAAAAAGGAAGTTACAAACCTTCCTGTCACTCTATTACGGATCCAAAGTGCTCGAAATCGAATTAGTGGAACAAGTAGAGCTCAGCTCGAAGATATAAACGGGTACAGGGTTTGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGTTGGCCTATTTTTGTTTTCTTGAGCAACTATTGGTTACAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCATGTGTACTTGGTCTCCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTGCCAGTTCGCTATGGTGGTTCTGTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAACCAGTTCTTTCGATCCTTCTTGCAACATTTGCTGGATTTGGTGTGGTAATGAGTGGAAGCTCTATCCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCAGGCTTCATCAGAGCAGCAACATGGCCCTCTACCGATAACACAAGCAGGACAGCATCCGCAAACTGTAAACACGCCACGTTCGGACCAATCCAACCATAGTCATGCCGTGGTTCAAGATCTTCAAAACTCAAATCAGAGCTGA 1581 0.4276 MSSQENKHVTQKEHDADHTTSCTRTVSPPVVHKDDDDDPMGITEETAHVPPRKKQNLLLEIPSRTPEECSQEFVAIKMPMTPSPTPTPTPKRVNFLMTSRSVDAPTNNSPGSGSSKGKSSIRNLLPKLSFRYRTPAADTEKANTPTPDVSSSGHREKPLISRSLSLSKIFTPRMKRTSSLPLEEIGHSNPESTHGGNGSVGGPLSKKETRQKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRVKEINESLSTSPTKDTEDEDADGGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKKEVTNLPVTLLRIQSARNRISGTSRAQLEDINGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASCQFAMVVLFAHIFYSLVHVQPVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQASSEQQHGPLPITQAGQHPQTVNTPRSDQSNHSHAVVQDLQNSNQS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01678 526 MobiDBLite consensus disorder prediction 177 210 - -
Trre8g01678 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 333 IPR013083 -
Trre8g01678 526 SMART ringv_2 277 326 IPR011016 GO:0008270
Trre8g01678 526 MobiDBLite consensus disorder prediction 1 20 - -
Trre8g01678 526 MobiDBLite consensus disorder prediction 182 199 - -
Trre8g01678 526 MobiDBLite consensus disorder prediction 1 66 - -
Trre8g01678 526 CDD RING_CH-C4HC3_MARCH 278 326 - -
Trre8g01678 526 MobiDBLite consensus disorder prediction 99 165 - -
Trre8g01678 526 MobiDBLite consensus disorder prediction 246 268 - -
Trre8g01678 526 Pfam RING-variant domain 278 325 IPR011016 GO:0008270
Trre8g01678 526 MobiDBLite consensus disorder prediction 484 526 - -
Trre8g01678 526 SUPERFAMILY RING/U-box 274 329 - -
Trre8g01678 526 MobiDBLite consensus disorder prediction 99 122 - -
Trre8g01678 526 PANTHER OS02G0165000 PROTEIN 2 488 - -
Trre8g01678 526 MobiDBLite consensus disorder prediction 29 51 - -
Trre8g01678 526 ProSiteProfiles Zinc finger RING-CH-type profile. 270 332 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01678 Trre-Chr8 13214542 13218217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01678 271 381 C3H Transcription Factor Family AT5G05830 33.058 2.54e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01678 - - gmx:100788108 719.924