Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01667 ATGGCTAAAGATGTTGAGGTTCAAGAACATGGAGAATACTCAGCTAAAGATTACCAAGACCCACCTCCAGCACCATTGATTGATGTTGAGGAACTAACAAAGTGGTCTTTTTATAGAGCTCTTATAGCTGAATTTGTAGCAACACTTCTTTTCCTTTATGTCACTATTTTGACCATCATTGGTTATAGCCACCAGTCTGATCCTAAGGCTGGTGGTACTGATTGTGATGGTGTTGGCATTTTGGGTATTGCTTGGGCTTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCTGCCGTGACATTCGGGCTACTTGTCGGACGGAAGATATCTTTGATTAGGGCAATATTCTACATGGCAGCACAGTCAGCCGGCGCAATCTGCGGTACCGGACTTGCCAAAGGCTTCCAAAAGGCATACTTTGATAGGTATGGAGGTGGTGCCAACTTTATCCATGATGGTTACAACAAAGGTACAGCTTTAGGTGCTGAAATTATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAACGCTAGAGACTCTCATGTTCCTGTTTTGGCACCACTTCCCATTGGATTTGCTGTTTTCATGGTTCACTTGGCTACTATTCCAATTACCGGTACCGGTATTAACCCGGCAAGAAGTTTCGGATCAGCCGTAATCTACAACGATGAAAAAATTTGGGATGATCAGTGGATATTTTGGGTTGGACCAATTATTGGAGCAACTATAGCTGCAATTTACCACCAATACATTCTAAGAGGATCAGCCATTAAAGCACTTGGATCATTCAGAAGCAATGCTTAA 858 0.4324 MAKDVEVQEHGEYSAKDYQDPPPAPLIDVEELTKWSFYRALIAEFVATLLFLYVTILTIIGYSHQSDPKAGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLVGRKISLIRAIFYMAAQSAGAICGTGLAKGFQKAYFDRYGGGANFIHDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGSAVIYNDEKIWDDQWIFWVGPIIGATIAAIYHQYILRGSAIKALGSFRSNA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01667 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 274 IPR034294 -
Trre8g01667 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g01667 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Trre8g01667 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Trre8g01667 285 SUPERFAMILY Aquaporin-like 30 270 IPR023271 -
Trre8g01667 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Trre8g01667 285 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01667 Trre-Chr8 13163757 13165322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01667 1 283 Major Intrinsic Protein MIP AT5G60660 78.092 1.71e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01667 K09872 - gmx:100811119 518.85