LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g01657	ATGAAGGAAACTGAAAAAGGGTACTTGGATCCACAACTATGGCATGCTTGTGCTGGTGGAATGGTTCAGATTCCACAAGTGAACTCTAAAGTTTACTATTTTCCACAAGGTCATGCTGAACATGCTAACACAAACATTGATCTAAGGGTTTCAGTTCCACCACTGATTCTTTGTAAAGTTGTTGCTGTTAAATTCATGGCTGAACCAGAGAGTGATGAAGTTTTTGCTATAATAAAGCTTCTTCCTTTAAGAAATTCTGAGTTTGGTTATGGTGAAGAAACTTGTGGTGGTGATGGTTTGGAAAATTCGGAAAAGCCTGCATCTTTTGCTAAGACTTTGACTCAATCTGATGCAAATAATGGTGGGGGTTTTTCTGTTCCGAGATACTGTGCTGAGACGATCTTTCCTCGGCTTGATTACTCGGCTGAGCCGCCTGTTCAGACGGTGGTGGCGAAGGATGTTCACGGCGAGCTTTGGAAGTTTAGGCATATTTATAGAGGGACGCCGCGTAGGCACTTGCTTACAACAGGATGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTCTTAGGGCTGAGAATGGTGAATTGTGTGTTGGAATTCGAAGGGCGAAAAAGGGAATTGGTAGTGGTTTTGATGGCTCATCTTGTGGTTGGACTTCTGGTTCGGGTTCTAACAATGGAAATTGTGGAATTGGACCTTTTGGGGCCTTTTCTTTCTTCATGAAAGAGGAGAATAAGGCATTGAGAAATGGTTTTGTCGGTGTTGATGGTAATTTGAGTGGAAGAGTGAGAGTGAGACATGAAGATGTTATGGAAGCTGTGAAATTGGCCGCTAATAACCAACCATTTGAAGTTGTTTACTATCCGAGAGCAAGCACTCCCGAGTTTTGTGTCAAGGCTTCGGCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGAATGAGATTCAAGATGCCTTTTGAAACTGAGGACTCTTCTAGGATTAGTTGGTTTATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCTAATTCACCGTGGCGCCTTCTTCAGGTTACATGGGACGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTCGAATTAGTTTCAAACGTACCAGTCATTCATTTTTCACCGTTTACTCCACCGAGGAAGAAGCTGCGGTTTCCACAAAACCTAGAATTCCCCCTCGACGTTCAATTTCCGTCACCGACGTTTTCAGGCAACCAGCTCGGGCTAAACAGCCCTTTGTTTGGTTTATCTGATAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAACAACAATAAACTTCAGTTAGGGCTGTTTCCTACTAATATCCAGCACTTTGATGTGCATAATAGGATTTCAAACGGTAACAACAACATGAAGACCGACAACGATAAGAATAAAGAAAGCTTATCATGCTTGTTGACCATAGGGAAAAAATCTGATAAGAGCTTGGAGAAATCTCAATCTGATGATGATGTTGTTAAGAAACATCAGTTTTGTCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAAATTGTTCTGAGAACAATTTAGTTGACGAGAGTAAGGACAAAGAGAAGTGGTTTTTGGACGCGTTTTCAGCAGGAAAAGGTTCTGATGCTGCTGAGTTTAGTTGGCAACTTGGTTTGGATATCGGTCATTGTAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACACTTGATTTATCACTTCTTGGTTCTTATGAAGAACTCTACAAGAAACTGGCTAACATGTTTGATTTAGAAAAATCTGAGATGTTGAATCGTGTGTTCTACCGCGATGCAACAGGTGCTGTGAAGCAAACTGGTGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATGTCAGAGGGGCTTGGATTACAGGAACTCACAAGGGTGAACATGGATTGAATGCCTCAAACAAAACAGGTCCTCTAAGCATATTTGCTTAA	2106	0.4207	MKETEKGYLDPQLWHACAGGMVQIPQVNSKVYYFPQGHAEHANTNIDLRVSVPPLILCKVVAVKFMAEPESDEVFAIIKLLPLRNSEFGYGEETCGGDGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSNNGNCGIGPFGAFSFFMKEENKALRNGFVGVDGNLSGRVRVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPQNLEFPLDVQFPSPTFSGNQLGLNSPLFGLSDNAPACIQGARHAQFGGISLSDLNLNNNKLQLGLFPTNIQHFDVHNRISNGNNNMKTDNDKNKESLSCLLTIGKKSDKSLEKSQSDDDVVKKHQFCLFGQPILTEQQISRNCSENNLVDESKDKEKWFLDAFSAGKGSDAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLNRVFYRDATGAVKQTGEEPFSEFMKTAKRLTILTDSGSKNVRGAWITGTHKGEHGLNASNKTGPLSIFA	701

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre8g01657	701	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	8	668	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Trre8g01657	701	FunFam	Auxin response factor	107	211	-	-
Trre8g01657	701	ProSiteProfiles	B3 DNA-binding domain profile.	109	211	IPR003340	GO:0003677
Trre8g01657	701	Gene3D	-	589	674	-	-
Trre8g01657	701	SMART	B3_2	109	211	IPR003340	GO:0003677
Trre8g01657	701	CDD	B3_DNA	108	209	IPR003340	GO:0003677
Trre8g01657	701	Pfam	B3 DNA binding domain	109	210	IPR003340	GO:0003677
Trre8g01657	701	FunFam	Auxin response factor	318	391	-	-
Trre8g01657	701	SUPERFAMILY	DNA-binding pseudobarrel domain	103	210	IPR015300	-
Trre8g01657	701	Gene3D	-	318	391	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g01657	Trre-Chr8	13026589	13029929	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g01657	4	673	B3 DNA Binding Superfamily	AT4G30080	56.628	0.0	720

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Trre8g01657		B3	2.9e-22	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g01657	-		-	gmx:100814686	1031.55

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