Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01656 ATGGATGATTTTCTCTTGACTCTTTTTCAGGATAATGCTAATATGAAGACCAATTGGTTTTTTGACAACAATTTTAACGGTGTGTCGGATGAGATTCTTGAAGATGTTGTTGAGTTTTTTGATTTCCCACATGAAGATGTGGAAACTGATGCTGTGGAAAATGATTGGAATGATCAATTCAAACACCTTGAAGAGCCATCTCTTGGGATATTTTCGGTACTACCATCATCGGAGCTGTATGGCGAAACTCAAAATGAGAAACCAAATCCCGTGAACAATTTTGCTGCTGCTGAACTTGCTCATATTGACAGAAGAAATATTGTTAATTCAAGCTTCAAAGGTCAACAAGGACCACTAAGAAAGGCCGCTGGACCAACATATGGCAGCAAAACTATTCCTATCCAAATGGTCTCTTTCGATGGAACAAATTTGCGAAAATGCCAAACCTACAGCCCAGTTTCGGTTTTTGAAAGCAGTAGTTACTCCTCAGTTGAGAACTTCAACTTTGAGTTACCAGTGGTCCCGGCAAAGCGTCCTCGCAGTAAACGCCAGCGTCTCTCAAGCTTTGACAAGCTCTTCACAATTCCATTCATCTCCACTTCACCTGCTTTTCAAAAACATCATTCGGAGAAACAGCGTGCTGGCAAATCATCAAGCAGAGTCGAAAGAAAGCCGAGGAAAAAGGATATCTCCTCACTCTCTGACGGTATTGAGATGAAGAGATCCTCATTACAGGATTCAGCTACCGCCAGAAAATGTATGCATTGCGAGGTAACCGAGACACCACAATGGAGAGAGGGGCCTAAGGGTCCGAAGACCCTATGCAACGCTTGTGGAGTTCGATACAGGTCTGGTCGTCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCAACTTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTCTTAGAAATCAGGAAAAAGGTTAGCTAG 960 0.4292 MDDFLLTLFQDNANMKTNWFFDNNFNGVSDEILEDVVEFFDFPHEDVETDAVENDWNDQFKHLEEPSLGIFSVLPSSELYGETQNEKPNPVNNFAAAELAHIDRRNIVNSSFKGQQGPLRKAAGPTYGSKTIPIQMVSFDGTNLRKCQTYSPVSVFESSSYSSVENFNFELPVVPAKRPRSKRQRLSSFDKLFTIPFISTSPAFQKHHSEKQRAGKSSSRVERKPRKKDISSLSDGIEMKRSSLQDSATARKCMHCEVTETPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVLEIRKKVS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01656 319 SMART GATA_3 247 297 IPR000679 GO:0006355|GO:0043565
Trre8g01656 319 Pfam GATA zinc finger 253 286 IPR000679 GO:0006355|GO:0043565
Trre8g01656 319 Gene3D - 244 317 IPR013088 GO:0006355|GO:0008270
Trre8g01656 319 ProSitePatterns GATA-type zinc finger domain. 253 278 IPR000679 GO:0006355|GO:0043565
Trre8g01656 319 FunFam GATA transcription factor 244 319 - -
Trre8g01656 319 ProSiteProfiles GATA-type zinc finger domain profile. 247 283 IPR000679 GO:0006355|GO:0043565
Trre8g01656 319 MobiDBLite consensus disorder prediction 206 235 - -
Trre8g01656 319 CDD ZnF_GATA 252 299 IPR000679 GO:0006355|GO:0043565
Trre8g01656 319 MobiDBLite consensus disorder prediction 204 244 - -
Trre8g01656 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 250 310 - -
Trre8g01656 319 PANTHER GATA TRANSCRIPTION FACTOR 48 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01656 Trre-Chr8 13010439 13012300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01656 18 317 C2C2-Gata Transcription Factor Family AT1G08010 36.076 8.50e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre8g01656 GATA 1.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01656 - - tpra:123919943 488.804