Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01632 ATGAGGCCAGAACAATTGCATGTTGCACAACAAATAAGGCGTGAAAAATTAAGAATTCAGAATCATATGCAACAAGAATTTGCTAACAACAATATAGAAGAATTATTATCACTACATCAACCACCACAAGGATTCAATAACATGGATCTTCTTCAACTCAGAAATGCTAACAACAACAACATGCTTAATGATGATGAATCAGGTCATTATTCATCTAATCAAATCATAAATACTTTTTCAACAACATCAAATCCTTTACATAGAAACCCTTTGGATTATGAGCTAGCTATAGCTGAACCAAGTAGTAGTAACATTAATAGACTCAATTATTATTATCATCCAAATGAAACCAATATTATTCCAAACACTTTCTTAACTTCTCATGAACAACAACAACAACTTAACACTAATGATGTTTTCAAGTCTCCAACTTCTTCAGAAATGGCTTCTTTAATGCACCATCATAGCAGCATTTGGGGAGGTGTAAATAGTCATAATACTAATGCTAATAGTATTGTGCCTATATTTCATGAAAATCAACATCAATGGACAAACAACAACAACAACAACAACAACAACATGGGTTCTTTCTTTAGTGATTATAATCCACAAGGTTTATCTTTATCACTTTCATCAAATTCACAATCAAAACAACCTTCAACTTCAACTACTTCAAATTTTGAACAAGGTTCATTAAATATTGTGAAACCATCTTTAGTTTCAAGAGATTGTGTGAAACCAATTCATCAAGAACAACAACAGCAACAACAACCTAGTAGTAGTAGTAGTGGTGGTTTTAGGAATGTTGGTCCTCTAGGACCATTTACTGGGTATGCAACAATTTTGAAAAGTTCAAGGTTTTTAAAACCATGTCAAGAGTTGTTAGAAGAATGTTGTTGTGATAAAAATGTTGTTGGAGTTCCAAAATGGGTTTCTCGAGATGTTATTGGTGTTGATGATGAAAGTGGGGGTGTTGTTTCTGCAAAAGGTAGTACCAGTAATTCAGGTGGTACTTCATCTTGTTCTATGTTGTATGGTTCAAAAGAGAAAGAGAACAGTAATGGTGATGGAGGAATTGGGAATAATTTTTGTCTTTCTTCTTCTTCTTCTTCTACTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAATTACTGTTCATGCACGAAGAGGTGACAAGAAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTAACATCTTTTGAGTCAGTAGCAGGTCTTAGTTCAGCTACACCATACATTTCATTGGCTCTAAAGTCACTATCAAAACACTTCAAATGCCTTAAAAATGCTATCACAGATCAACTCAAGTTTACATGTCAAGTATTGGGAGAGGATTTTTCAATACTACCAACCACTACAAGTAGTAGTAGTAAATTTGATAGCAACAATAATAACATGACAAGGCTAAGGTGCATGAATCAGAGTATTCAAAAGAACAAATCTGGTGGGAATAGTAATGTTGACTTTGTTGAACCTCAACAACAACATGTTTGGAGGCCCCAGAGAGGATTGCCAGAACGTTCAGTGGCGATTCTTAAAGCTTGGTTATTTGAACATTTTCTTCACCCGTACCCCACGGACACTGATAAACACATGTTGGCTAGTCAAACAGGTCTATCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTAGAGTTCGTGTATGGAAACCAATGGTTGAGGAAATACACATGCTTGAATCAAAAGGAACAACAGAAGTTCAGAATCAGAACAATAGTAAAAATGAAGCCTCCAATGTTAGAGCACATGAAAAACAATTTCAGTGTTTGGAAGTGGGGTCATCTTCAGGAATTAACAATGTTGAAAATGTAACAAATGAAGAGCAATGGAATAATATTCAAGAGAAGAGGTCTAAATTAGAAAATGATCAAATTACACCAAATATGGATACAACAGTGATGGGTTTTATGCCGTATCAACGCGGATCCGTGTCGCTGACTTTGGGTTTGAGACACGGCGTTGAAAATGCACAACACCAACAACAGCAGTTGCAACAAGAGGTGGAGCTTAGACATCAATATGGAGGGCATATGTTCCATGATTTTGTGGGTTAA 2103 0.3557 MRPEQLHVAQQIRREKLRIQNHMQQEFANNNIEELLSLHQPPQGFNNMDLLQLRNANNNNMLNDDESGHYSSNQIINTFSTTSNPLHRNPLDYELAIAEPSSSNINRLNYYYHPNETNIIPNTFLTSHEQQQQLNTNDVFKSPTSSEMASLMHHHSSIWGGVNSHNTNANSIVPIFHENQHQWTNNNNNNNNNMGSFFSDYNPQGLSLSLSSNSQSKQPSTSTTSNFEQGSLNIVKPSLVSRDCVKPIHQEQQQQQQPSSSSSGGFRNVGPLGPFTGYATILKSSRFLKPCQELLEECCCDKNVVGVPKWVSRDVIGVDDESGGVVSAKGSTSNSGGTSSCSMLYGSKEKENSNGDGGIGNNFCLSSSSSSTSRPECQKNKAQLLFMHEEVTRRYKQYHQQMQMVVTSFESVAGLSSATPYISLALKSLSKHFKCLKNAITDQLKFTCQVLGEDFSILPTTTSSSSKFDSNNNNMTRLRCMNQSIQKNKSGGNSNVDFVEPQQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGTTEVQNQNNSKNEASNVRAHEKQFQCLEVGSSSGINNVENVTNEEQWNNIQEKRSKLENDQITPNMDTTVMGFMPYQRGSVSLTLGLRHGVENAQHQQQQLQQEVELRHQYGGHMFHDFVG 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01632 700 CDD homeodomain 507 568 IPR001356 GO:0003677
Trre8g01632 700 SUPERFAMILY Homeodomain-like 509 573 IPR009057 -
Trre8g01632 700 MobiDBLite consensus disorder prediction 248 268 - -
Trre8g01632 700 ProSiteProfiles 'Homeobox' domain profile. 504 567 IPR001356 GO:0003677
Trre8g01632 700 Gene3D - 510 572 - -
Trre8g01632 700 Pfam Homeobox KN domain 524 563 IPR008422 GO:0003677|GO:0006355
Trre8g01632 700 FunFam BEL1-like homeodomain protein 9 510 572 - -
Trre8g01632 700 MobiDBLite consensus disorder prediction 208 229 - -
Trre8g01632 700 Pfam Associated with HOX 281 441 IPR006563 -
Trre8g01632 700 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 211 589 - -
Trre8g01632 700 SMART prehox3 276 442 IPR006563 -
Trre8g01632 700 MobiDBLite consensus disorder prediction 248 267 - -
Trre8g01632 700 SMART HOX_1 507 571 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01632 Trre-Chr8 12766396 12773881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01632 384 577 Homeobox Transcription Factor Family AT5G02030 55.288 2.11e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre8g01632 POX 7.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01632 - - tpra:123919922 1072.77