Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01624 ATGAACAAAAGAGATAAAATAAAGAAACATGATTTTGTTGTTACAATAATTGTTGTATTGTTCAGTTGCACTGTTGGACCACAACTAGTTTCTTGTCAGAAAAAAAATGCTGCTGCTGGTGGTGGTGGTGGTGGCGGTGCCGGTGGCAGTGGTGGTGGTTCAGGTGCCGGTCTTGAGGATATAGTCGCGAAAGAATTGTATCGTGGCATGTCAAGTTATACAAATGTTTTCAAAGCTGCAATAAAAAAAGAGTTGGGTTATTGCATAGTTGATGTGGATGCTGATTGGGATGGTGCCTTTAATTTCACCAAAGATCTCACATTTTTGTCCATGTGTGCCCAAGAAATGAAAGGTGATATTACACAAAGGATGTGCACATCAGGAGAAATAGAAGCCTATGCCAGAAGTTTTGCTGCAGGAAACAAGTCTGCAGGCTCTGGAAGAACCAAAGCAAACTTCTTGAAGCCGAACAAAAACTGTAATTTGAGTTCTTGGGTTAATGGATGTGAACCTGGTTGGGGATGCAAAGCTAATGAGAAAGTTGATGTTAATAGTAATAAGAAGGAAATACCTGTTAGATCAGCTGATTGCAAACCTTGTTGTGAAGGTTTCTTTTGTCCTCGCGGCATCACCTGCATGATCCCTTGTCCTTTGGGATCTTATTGTCCGCGTGGGGAACTAAATAAAACTAGTGGAATATGTGCACCATATCGTTATCAGTTACCTCCTGGAAAAGCTAACCATAGTTGTGGAGGAGCAGATATTTGGGCGGACATTACAAGTAGTAGCGAGGTATTCTGTTCAGCAGGATCATATTGTCCATCTACAATCGTAAAAAATCCTTGCAGTAGAGGGTATTACTGCAGAAAAGGTTCTATATCTCAAGAGAGATGTTTCAGGCTAGCAAGCTGTGAGCCTAAATCAGCAAATCAAAATATTACTGCATATGGTCTCTTGGTTTTTGCCGGCTTATGTTTTATGTTGATTATCATATACAACTGTTCTGATCAAGTTCTCGCAACTCGAGAAAGAAGACAAGCGAAATCAAGAGAAAGGGCTGCTGCAAGTGTAAGAGAAACGCAAGCGCGCGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCAGTAGGATTACAATCACAATTATCGCGTACATTTTCGCGCAAAAAAACATCGAAAATGCCAGATTTCAAAGGTGCGTTACCACCTATGGGACCTGGTGCATCAAAAAAGAAAAAGGATAAAAACAACCTGTCAAAAATAATAAGTGATATCGAGCAAGATCCTGATAGTCAAGAAGGGTTCAATGTTGAAATAGGAGATAAAAATGTGAAAAAACAAGCACCGAGGGGTAAGGCTTTGCATACTCACAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCATTACAGGAACAAAATAAGAACTTGACATTCTCCGGAGTGATTTCAATGGCTAGTGACATTGATATAAGGAAAAGGCCTACGATTGAGGTTGCTTTTAAAGACTTAACACTAACTTTGAAAGGGAAAAATAAACATCTATTAAGATGTGTGACCGGTAAGTTATTACCCGGCCGAGTTTCTGCTGTCATGGGTCCATCTGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGTAAAGCAGCTGGATGCCACACAACTGGTCAAGTTCTTGTAAATGGTCAGGAATCGTCTATTCGATCATTCAAGAGGATCATCGGCTTTGTTCCACAAGATGATATTGTCCATGGCAATTTGACAGTGGAGGAGAATCTTTGGTTTAGTGCCAGATGCAGACTCTCGGCTGATCTACCGAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAATCCTTGGGTCTGCAGGCAATAAGAGATTCTTTGGTTGGGACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAGAGAGTAAATGTCGGACTAGAAATGGTTATGGAACCCTCCCTTCTAATTTTGGATGAACCTACATCTGGTTTGGACAGTTCATCTTCTCAATTACTGCTTAGAGCACTTAGACGCGAGGCTCTTGAAGGCGTAAACATATGTATGGTCCTTCACCAACCGAGCTACACATTGTTCAAGATGTTTGATGATTTTATACTGCTAGCTAAAGGAGGCCTTACAGTGTATCATGGACCTGTTAGCAAAGTGGAAGAGTACTTCTCTGGCATAGGGATTGTTGTCCCTGACCGCGTAAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATAATAAAACCAAGTGCAAGCTCAGGAGTGACCCATAAACAACTACCAGTTAGATGGATGCTTCATAATGGATATCCTGTGCCTATGGATATGCTGCAACTTGTAGAAGGAATGTCTACTCCAAGTGGTAGCATTCCAGCACAAGCACCTAACCCTAATGCAAAGCTTACTGCCGCACCTTCTTTTGCCGGAGAACTTTGGCAGGATGTGAAGTGCAACGTTGAGATGAAGAGAGACAACCTTCAACTCAATTTCTTAGCTTCAAATGATTTAGTTGGTAAGCAGCGGTTGCGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTCTGTTGCTAGCTGGTGTTTGCTTAGGAACACTTGCTAAAGTGAGCGATGAATCATTTGGAGCAACTGGTTATACATACACCGTAATTGCAGTATCACTCCTTTCCAAGATTGCAGCTTTGAGATCATTCTCATTGGATAAGTTGCATTACTGGAGAGAAAGTGCGTCAGGGATGAGTAGCCTTGCTTACTTTCTCTCAAAAGATACAGTTGACCATTTCAGTACACTTATCAAACCTCTAGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTTTTACAGATAACTACTTTGTTCTACTATGTTTGGTGTATTGTGTCACCGGCATTGCTTATGTGTTGGCAATCTTCCTTCAACCAGGTCCAGCCCAGCTGTGGTCAGTGTTACTACCAGTAGTTTTGACTCTCCTAGCAACTTATGAAAATGAAGAGGATAGCAGTTATGTCGCTTTTCTATCTGATTTGTGCTACACCAAATGGGCTCTTGAAGCATTTGTTATATCAAATGCTAAAAGATATTCTGGTGTTTGGCTAATAAGCCGATGTGGTGCACTCCACTCATACGGCTATGATCTCAAACATTGGTACCAATGTTTAGGACTCCTTGTTGTAACAGGAATAATTAGCCGCATGCTTGCATTTTTTTGCTACATATGCAAGACTCTGGCTGGTGCTACAACCACGAGTCATGATCAGTGCTCACCAACTAGTAAAGCAATGTGA 3342 0.4105 MNKRDKIKKHDFVVTIIVVLFSCTVGPQLVSCQKKNAAAGGGGGGGAGGSGGGSGAGLEDIVAKELYRGMSSYTNVFKAAIKKELGYCIVDVDADWDGAFNFTKDLTFLSMCAQEMKGDITQRMCTSGEIEAYARSFAAGNKSAGSGRTKANFLKPNKNCNLSSWVNGCEPGWGCKANEKVDVNSNKKEIPVRSADCKPCCEGFFCPRGITCMIPCPLGSYCPRGELNKTSGICAPYRYQLPPGKANHSCGGADIWADITSSSEVFCSAGSYCPSTIVKNPCSRGYYCRKGSISQERCFRLASCEPKSANQNITAYGLLVFAGLCFMLIIIYNCSDQVLATRERRQAKSRERAAASVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKKTSKMPDFKGALPPMGPGASKKKKDKNNLSKIISDIEQDPDSQEGFNVEIGDKNVKKQAPRGKALHTHSQIFKYAYGQIEKEKALQEQNKNLTFSGVISMASDIDIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLLPGRVSAVMGPSGAGKTTFLSALTGKAAGCHTTGQVLVNGQESSIRSFKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVSKVEEYFSGIGIVVPDRVNPPDYYIDILEGIIKPSASSGVTHKQLPVRWMLHNGYPVPMDMLQLVEGMSTPSGSIPAQAPNPNAKLTAAPSFAGELWQDVKCNVEMKRDNLQLNFLASNDLVGKQRLREARTQAVDFLILLLAGVCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTVDHFSTLIKPLVYLSMFYFFNNPRSSFTDNYFVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLLATYENEEDSSYVAFLSDLCYTKWALEAFVISNAKRYSGVWLISRCGALHSYGYDLKHWYQCLGLLVVTGIISRMLAFFCYICKTLAGATTTSHDQCSPTSKAM 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01624 1113 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Trre8g01624 1113 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 460 1083 - -
Trre8g01624 1113 Pfam ABC-2 type transporter 703 1092 IPR043926 GO:0140359
Trre8g01624 1113 SMART AAA_5 531 732 IPR003593 GO:0016887
Trre8g01624 1113 Pfam ABC transporter 525 674 IPR003439 GO:0005524
Trre8g01624 1113 CDD ABCG_EPDR 503 729 - -
Trre8g01624 1113 ProSitePatterns ABC transporters family signature. 646 660 IPR017871 GO:0005524|GO:0016887
Trre8g01624 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 739 IPR027417 -
Trre8g01624 1113 Gene3D - 495 740 IPR027417 -
Trre8g01624 1113 FunFam ABC transporter G family member 24 499 741 - -
Trre8g01624 1113 MobiDBLite consensus disorder prediction 386 418 - -
Trre8g01624 1113 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 505 746 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01624 Trre-Chr8 12697836 12703764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01624 532 727 Calmodulin-binding Proteins AT2G36910 27.907 1.58e-11 67.0