Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01623 ATGAACAAAAGAGATAAAATAAAGAAACATGATTTTGTTGTTACAATAATTGTTGTATTGTTCAGTTGCACTGTTGGACCACAACTAGTTTCTTGTCAGAAAAAAAATGCTGCTGCTGGTGGTGGTGGTGGTGGCGGTGCCGGTGGCAGTGGTGGTGGTTCAGGTGCCGGTCTTGAGGATATAGTCGCGAAAGAATTGTATCGTGGCATGTCAAGTTATACAAATGTTTTCAAAGCTGCAATAAAAAAAGAGTTGGGTTATTGCATAGTTGATGTGGATGCTGATTGGGATGGTGCCTTTAATTTCACCAAAGATCTCACATTTTTGTCCATGTGTGCCCAAGAAATGAAAGGTGATATTACACAAAGGATGTGCACATCAGGAGAAATAGAAGCCTATGCCAGAAGTTTTGCTGCAGGAAACAAGTCTGCAGGCTCTGGAAGAACCAAAGCAAACTTCTTGAAGCCGAACAAAAACTGTAATTTGAGTTCTTGGGTTAATGGATGTGAACCTGGTTGGGGATGCAAAGCTAATGAGAAAGTTGATGTTAATAGTAATAAGAAGGAAATACCTGTTAGATCAGCTGATTGCAAACCTTGTTGTGAAGGTTTCTTTTGTCCTCGCGGCATCACCTGCATGATCCCTTGTCCTTTGGGATCTTATTGTCCGCGTGGGGAACTAAATAAAACTAGTGGAATATGTGCACCATATCGTTATCAGTTACCTCCTGGAAAAGCTAACCATAGTTGTGGAGGAGCAGATATTTGGGCGGACATTACAAGTAGTAGCGAGGTATTCTGTTCAGCAGGATCATATTGTCCATCTACAATCGTAAAAAATCCTTGCAGTAGAGGGTATTACTGCAGAAAAGGTTCTATATCTCAAGAGAGATGTTTCAGGCTAGCAAGCTGTGAGCCTAAATCAGCAAATCAAAATATTACTGCATATGGTCTCTTGGTTTTTGCCGGCTTATGTTTTATGTTGATTATCATATACAACTGTTCTGATCAAGTTCTCGCAACTCGAGAAAGAAGACAAGCGAAATCAAGAGAAAGGGCTGCTGCAAGTGTAAGAGAAACGCAAGCGCGCGAAAAATGGAAATCTGCAAAAGACATTGCTAAGAAGCATGCAGTAGGATTACAATCACAATTATCGCGTACATTTTCGCGCAAAAAAACATCGAAAATGCCAGATTTCAAAGGTGCGTTACCACCTATGGGACCTGGTGCATCAAAAAAGAAAAAGGATAAAAACAACCTGTCAAAAATAATAAGTGATATCGAGCAAGATCCTGATAGTCAAGAAGGGTTCAATGTTGAAATAGGAGATAAAAATGTGAAAAAACAAGCACCGAGGGGTAAGGCTTTGCATACTCACAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCATTACAGGAACAAAATAAGAACTTGACATTCTCCGGAGTGATTTCAATGGCTAGTGACATTGATATAAGGAAAAGGCCTACGATTGAGGTTGCTTTTAAAGACTTAACACTAACTTTGAAAGGGAAAAATAAACATCTATTAAGATGTGTGACCGGTAAGTTATTACCCGGCCGAGTTTCTGCTGTCATGGGTCCATCTGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGTAAAGCAGCTGGATGCCACACAACTGGTCAAGTTCTTGTAAATGGTCAGGAATCGTCTATTCGATCATTCAAGAGGATCATCGGCTTTGTTCCACAAGATGATATTGTCCATGGCAATTTGACAGTGGAGGAGAATCTTTGGTTTAGTGCCAGATGCAGACTCTCGGCTGATCTACCGAAAGAAGAGAAGGTGTTAGTGGTTGAAAGAGTCATTGAATCCTTGGGTCTGCAGGCAATAAGAGATTCTTTGGTTGGGACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAGAGAGTAAATGTCGGACTAGAAATGGTTATGGAACCCTCCCTTCTAATTTTGGATGAACCTACATCTGGTTTGGACAGTTCATCTTCTCAATTACTGCTTAGAGCACTTAGACGCGAGGCTCTTGAAGGCGTAAACATATGTATGGTCCTTCACCAACCGAGCTACACATTGTTCAAGATGTTTGATGATTTTATACTGCTAGCTAAAGGAGGCCTTACAGTGTATCATGGACCTGTTAGCAAAGTGGAAGAGTACTTCTCTGGCATAGGGATTGTTGTCCCTGACCGCGTAAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATAATAAAACCAAGTGCAAGCTCAGGAGTGACCCATAAACAACTACCAGTTAGATGGATGCTTCATAATGGATATCCTGTGCCTATGGATATGCTGCAACTTGTAGAAGGAATGTCTACTCCAAGTGGTAGCATTCCAGCACAAGCACCTAACCCTAATGCAAAGCTTACTGCCGCACCTTCTTTTGCCGGAGAACTTTGGCAGGATGTGAAGTGCAACGTTGAGATGAAGAGAGACAACCTTCAACTCAATTTCTTAGCTTCAAATGATTTGTCAAATAGGAATACGCCTGGATCTTTCCAACAATACAAATACTTTCTTGGAAGAGTTGGTAAGCAGCGGTTGCGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTCTGTTGCTAGCTGGTGTTTGCTTAGGAACACTTGCTAAAGTGAGCGATGAATCATTTGGAGCAACTGGTTATACATACACCGTAATTGCAGTATCACTCCTTTCCAAGATTGCAGCTTTGAGATCATTCTCATTGGATAAGTTGCATTACTGGAGAGAAAGTGCGTCAGGGATGAGTAGCCTTGCTTACTTTCTCTCAAAAGATACAGTTGACCATTTCAGTACACTTATCAAACCTCTAGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTTTTACAGATAACTACTTTGTTCTACTATGTTTGGTGTATTGTGTCACCGGCATTGCTTATGTGTTGGCAATCTTCCTTCAACCAGGTCCAGCCCAGCTGTGGTCAGTGTTACTACCAGTAGTTTTGACTCTCCTAGCAACTTATGAAAATGAAGAGGATAGCAGTTATGTCGCTTTTCTATCTGATTTGTGCTACACCAAATGGGCTCTTGAAGCATTTGTTATATCAAATGCTAAAAGATATTCTGGTGTTTGGCTAATAAGCCGATGTGGTGCACTCCACTCATACGGCTATGATCTCAAACATTGGTACCAATGTTTAGGACTCCTTGTTGTAACAGGAATAATTAGCCGCATGCTTGCATTTTTTTGCTACATATGCAAGACTCTGGCTGGTGCTACAACCACGAGTCATGATCAGTGCTCACCAACTAGTAAAGCAATGTGA 3396 0.4099 MNKRDKIKKHDFVVTIIVVLFSCTVGPQLVSCQKKNAAAGGGGGGGAGGSGGGSGAGLEDIVAKELYRGMSSYTNVFKAAIKKELGYCIVDVDADWDGAFNFTKDLTFLSMCAQEMKGDITQRMCTSGEIEAYARSFAAGNKSAGSGRTKANFLKPNKNCNLSSWVNGCEPGWGCKANEKVDVNSNKKEIPVRSADCKPCCEGFFCPRGITCMIPCPLGSYCPRGELNKTSGICAPYRYQLPPGKANHSCGGADIWADITSSSEVFCSAGSYCPSTIVKNPCSRGYYCRKGSISQERCFRLASCEPKSANQNITAYGLLVFAGLCFMLIIIYNCSDQVLATRERRQAKSRERAAASVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKKTSKMPDFKGALPPMGPGASKKKKDKNNLSKIISDIEQDPDSQEGFNVEIGDKNVKKQAPRGKALHTHSQIFKYAYGQIEKEKALQEQNKNLTFSGVISMASDIDIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLLPGRVSAVMGPSGAGKTTFLSALTGKAAGCHTTGQVLVNGQESSIRSFKRIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVSKVEEYFSGIGIVVPDRVNPPDYYIDILEGIIKPSASSGVTHKQLPVRWMLHNGYPVPMDMLQLVEGMSTPSGSIPAQAPNPNAKLTAAPSFAGELWQDVKCNVEMKRDNLQLNFLASNDLSNRNTPGSFQQYKYFLGRVGKQRLREARTQAVDFLILLLAGVCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTVDHFSTLIKPLVYLSMFYFFNNPRSSFTDNYFVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLLATYENEEDSSYVAFLSDLCYTKWALEAFVISNAKRYSGVWLISRCGALHSYGYDLKHWYQCLGLLVVTGIISRMLAFFCYICKTLAGATTTSHDQCSPTSKAM 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01623 1131 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 460 1101 - -
Trre8g01623 1131 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Trre8g01623 1131 Pfam ABC transporter 525 674 IPR003439 GO:0005524
Trre8g01623 1131 SMART AAA_5 531 732 IPR003593 GO:0016887
Trre8g01623 1131 CDD ABCG_EPDR 503 729 - -
Trre8g01623 1131 ProSitePatterns ABC transporters family signature. 646 660 IPR017871 GO:0005524|GO:0016887
Trre8g01623 1131 Pfam ABC-2 type transporter 703 1110 IPR043926 GO:0140359
Trre8g01623 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 739 IPR027417 -
Trre8g01623 1131 MobiDBLite consensus disorder prediction 386 418 - -
Trre8g01623 1131 FunFam ABC transporter G family member 24 499 741 - -
Trre8g01623 1131 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 505 746 IPR003439 GO:0005524
Trre8g01623 1131 Gene3D - 495 740 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01623 Trre-Chr8 12697836 12703764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01623 532 727 Calmodulin-binding Proteins AT2G36910 27.907 1.63e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01623 - - gmx:100794093 1834.31