Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01609 ATGGGAAGAGCTCCATGTTGTGACAAAACAAGTGTCAAGAGAGGTCCATGGTCACCAGAAGAAGACTCAAAGCTTAAAGATTACATAGACAAACATGGCACTGGTGGGAATTGGATTTCTCTTCCTCATAAAGCTGGTCTCAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATCTTAGGCCAAACATTAAGCATGGAGATTTTTCTGATGAGGAAGATAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAATTGCCAGGTAGGACTGACAATGATATCAAGAACTATTGGAACACAAAATTGAAGAAAAAACTTATGGCTTTGCAGTTTCCACCATCACATCAAAGAAAACCACAGTTTCCACCTTTTCCTTCTACTCATCCATTCTCAGACTACTTTATTACTACTCACACCCCCTACACAGATTTTCAAACCATTTCACTTCCATCTAATATTAACTATCCAAACACAAGTTTCAACCCTTTTTACCAAAACCAAGAGTCTATGATTAGTCTTAATCCTTCCATGCAATATAATAATTATCATATCAAAGACAATAACAACATGTTTATGTTTGGAAGTGAAGGGAGTTGTAGTTCATCTGATGGAAGTTGCAAGGAAATCAAGCAAGAAGAAATTGGTTATCATCACATGAATAGTGCTAGATTTGATGACTACAACAACAATAACTTTATGGTTAATTGTAACAATGGAAGTGTTGGTGAAAATATTAACCAATATGAAGAAAAACCAAGTGGAGTTGGATATGGTTATAATAATGGTCAAAGTCAAACATTAAGTACTCCATTACTAGATTATGGTCTTGAAGATATTAAGCAATTGATTAGTAGTGACAACAAAGATTTTAATGTTGATGAGATTCATAAGAGTGAAGAAAATGGTATGTATTACTTCCATTATTGA 960 0.3458 MGRAPCCDKTSVKRGPWSPEEDSKLKDYIDKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALQFPPSHQRKPQFPPFPSTHPFSDYFITTHTPYTDFQTISLPSNINYPNTSFNPFYQNQESMISLNPSMQYNNYHIKDNNNMFMFGSEGSCSSSDGSCKEIKQEEIGYHHMNSARFDDYNNNNFMVNCNNGSVGENINQYEEKPSGVGYGYNNGQSQTLSTPLLDYGLEDIKQLISSDNKDFNVDEIHKSEENGMYYFHY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01609 319 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre8g01609 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre8g01609 319 CDD SANT 71 113 IPR001005 -
Trre8g01609 319 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre8g01609 319 FunFam Transcription factor RAX3 7 68 - -
Trre8g01609 319 SMART sant 13 64 IPR001005 -
Trre8g01609 319 SMART sant 67 115 IPR001005 -
Trre8g01609 319 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Trre8g01609 319 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre8g01609 319 FunFam Transcription factor MYB36 70 135 - -
Trre8g01609 319 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g01609 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Trre8g01609 319 CDD SANT 16 62 IPR001005 -
Trre8g01609 319 PANTHER OS09G0431300 PROTEIN 1 258 - -
Trre8g01609 319 Gene3D - 7 68 - -
Trre8g01609 319 Gene3D - 70 131 - -
Trre8g01609 319 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01609 Trre-Chr8 12518263 12520456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01609 1 121 MYB Transcription Factor Family AT5G57620 86.777 7.99e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g01609 Myb_DNA-binding 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01609 K09422 - gmx:100779919 346.665