Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01594 ATGTCAAAGCCACCACCTTCCGCCTTCGATTTTCTCATGTCCGGCGCACGCGCCGCCGCTGCCAAGAAGAAACCTCCTTCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTTCTCCTTCTCCTTCTCCTTCTCCATCTCCACTCCCCCCTCCCGCTCTAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCCAAGGGGATAATTTCCGAATTGAAGGAGCTAATTCCGCAGCTGAAGAAGAAACCACCTAGTTTCGATCCAAGTTCTGTTGTTTGCTGGGAGAAAGACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCCTTCGATATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACGGTCATATACATTACACCGGAGGATCTTGTTCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACCAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATCAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAACAAATTAGGAATCAGTATAAGGAAAAAGGTGATTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACCATTAGGAAGGTTTTCAAGACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCCGAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCACAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAATTTCAGGATGTAGAGTTTACATGTGAGTACAAATACGATGGAGAACGTGCTCAGATACATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCATGCACTTCTACAGAAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCTTTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTGATTATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGTTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTCCATGGACGCGGTAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAACGATAACGAAGAGTTTCAAAGTATTGCCAAGATAGGAACTGGATTCAAAGAGGAAGTGCTTGAAGAACGTTCTACTAGCCTTCGGTCTAAAGTAATTCCCAAACCAAAGTCATATTATCAATATGGGGAATCAACCAATCCTGATGTATGGTTTGAAGCTAGTGAGGTGTGGGAGGTAAAAGCTGCAGATCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCAAAGTAGATTCCAATAAGGGCATATCTCTTCGATTTCCGCGTCTAGTTCGAGTTCGGCCGGACAAAGCTCCTGAACAGGCCTCTTCGTCTGAGCAGGTTGCTGAAATGTATACTGCTCAAAAACACAATCACAACGACAAACAGGATGACGATGAAGATGATTAA 2205 0.4277 MSKPPPSAFDFLMSGARAAAAKKKPPSSSSSPKKRKSPPPSPSPSPSPSPLPPPALNPNNNLKTLETVETVEPPNKIRNTSSSSKGIISELKELIPQLKKKPPSFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYITPEDLVPVVYLSANRIAPAHQGLELGIGDASIIKALAEACGRTEQQIRNQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPQKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGHALLQKNLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSIAKIGTGFKEEVLEERSTSLRSKVIPKPKSYYQYGESTNPDVWFEASEVWEVKAADLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYTAQKHNHNDKQDDDEDD 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01594 734 MobiDBLite consensus disorder prediction 705 719 - -
Trre8g01594 734 Pfam ATP dependent DNA ligase C terminal region 591 702 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre8g01594 734 NCBIfam ATP-dependent DNA ligase 178 717 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre8g01594 734 ProSitePatterns ATP-dependent DNA ligase signature 2. 540 566 IPR016059 GO:0003909
Trre8g01594 734 FunFam DNA ligase 97 364 - -
Trre8g01594 734 MobiDBLite consensus disorder prediction 1 61 - -
Trre8g01594 734 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 386 394 IPR016059 GO:0003909
Trre8g01594 734 Gene3D - 97 364 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01594 734 MobiDBLite consensus disorder prediction 32 57 - -
Trre8g01594 734 Pfam DNA ligase N terminus 120 295 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01594 734 CDD OBF_DNA_ligase_I 574 717 - -
Trre8g01594 734 CDD Adenylation_DNA_ligase_I_Euk 351 569 - -
Trre8g01594 734 Gene3D DNA ligase/mRNA capping enzyme 391 516 - -
Trre8g01594 734 MobiDBLite consensus disorder prediction 700 734 - -
Trre8g01594 734 Pfam ATP dependent DNA ligase domain 362 566 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01594 734 Gene3D - 571 734 IPR012340 -
Trre8g01594 734 ProSiteProfiles ATP-dependent DNA ligase family profile. 468 604 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01594 734 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 354 572 - -
Trre8g01594 734 Gene3D - 372 570 - -
Trre8g01594 734 FunFam DNA ligase 571 730 - -
Trre8g01594 734 FunFam DNA ligase 362 568 - -
Trre8g01594 734 SUPERFAMILY Nucleic acid-binding proteins 574 720 IPR012340 -
Trre8g01594 734 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 25 733 - -
Trre8g01594 734 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 103 352 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01594 Trre-Chr8 12339613 12346557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01594 1 732 Core DNA Replication Machinery Family AT1G08130 66.756 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01594 K10747 - gmx:100783155 1098.19