Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01593 ATGTTCGCATTACATTTCAAACCGTATTTTCCTCTTCCGTTATTATTCCGCATTTCCGTTAATTCTTCTTCTTCCAGTTTAACATTCTCTCTCTCACTAACCCCTCGCCGCAAAATGTCAAAGCCACCACCTTCCGCCTTCGATTTTCTCATGTCCGGCGCACGCGCCGCCGCTGCCAAGAAGAAACCTCCTTCTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTTCTCCTTCTCCTTCTCCTTCTCCATCTCCACTCCCCCCTCCCGCTCTAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCCAAGGGGATAATTTCCGAATTGAAGGAGCTAATTCCGCAGCTGAAGAAGAAACCACCTAGTTTCGATCCAAGTTCTGTTGTTTGCTGGGAGAAAGACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCCTTCGATATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACGGTCATATACATTACACCGGAGGATCTTGTTCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACCAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATCAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAACAAATTAGGAATCAGTATAAGGAAAAAGGTGATTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACCATTAGGAAGGTTTTCAAGACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCCGAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCACAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAATTTCAGGATGTAGAGTTTACATGTGAGTACAAATACGATGGAGAACGTGCTCAGATACATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCATGCACTTCTACAGAAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCTTTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTGATTATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGTTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTCCATGGACGCGGTAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAACGATAACGAAGAGTTTCAAAGTATTGCCAAGATAGGAACTGGATTCAAAGAGGAAGTGCTTGAAGAACGTTCTACTAGCCTTCGGTCTAAAGTAATTCCCAAACCAAAGTCATATTATCAATATGGGGAATCAACCAATCCTGATGTATGGTTTGAAGCTAGTGAGGTGTGGGAGGTAAAAGCTGCAGATCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCAAAGTAGATTCCAATAAGGGCATATCTCTTCGATTTCCGCGTCTAGTTCGAGTTCGGCCGGACAAAGCTCCTGAACAGGCCTCTTCGTCTGAGCAGGTTGCTGAAATGTATACTGCTCAAAAACACAATCACAACGACAAACAGGATGACGATGAAGATGATTAA 2319 0.426 MFALHFKPYFPLPLLFRISVNSSSSSLTFSLSLTPRRKMSKPPPSAFDFLMSGARAAAAKKKPPSSSSSPKKRKSPPPSPSPSPSPSPLPPPALNPNNNLKTLETVETVEPPNKIRNTSSSSKGIISELKELIPQLKKKPPSFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYITPEDLVPVVYLSANRIAPAHQGLELGIGDASIIKALAEACGRTEQQIRNQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPQKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGHALLQKNLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSIAKIGTGFKEEVLEERSTSLRSKVIPKPKSYYQYGESTNPDVWFEASEVWEVKAADLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYTAQKHNHNDKQDDDEDD 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01593 772 CDD OBF_DNA_ligase_I 612 755 - -
Trre8g01593 772 CDD Adenylation_DNA_ligase_I_Euk 389 607 - -
Trre8g01593 772 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 141 390 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01593 772 Pfam DNA ligase N terminus 158 333 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01593 772 MobiDBLite consensus disorder prediction 738 772 - -
Trre8g01593 772 Gene3D DNA ligase/mRNA capping enzyme 429 554 - -
Trre8g01593 772 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 392 610 - -
Trre8g01593 772 MobiDBLite consensus disorder prediction 55 99 - -
Trre8g01593 772 SUPERFAMILY Nucleic acid-binding proteins 612 758 IPR012340 -
Trre8g01593 772 NCBIfam ATP-dependent DNA ligase 216 755 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre8g01593 772 MobiDBLite consensus disorder prediction 743 757 - -
Trre8g01593 772 Gene3D - 135 402 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01593 772 ProSitePatterns ATP-dependent DNA ligase signature 2. 578 604 IPR016059 GO:0003909
Trre8g01593 772 Gene3D - 609 772 IPR012340 -
Trre8g01593 772 ProSiteProfiles ATP-dependent DNA ligase family profile. 506 642 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01593 772 Pfam ATP dependent DNA ligase domain 400 604 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01593 772 FunFam DNA ligase 609 768 - -
Trre8g01593 772 FunFam DNA ligase 135 402 - -
Trre8g01593 772 Pfam ATP dependent DNA ligase C terminal region 629 740 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre8g01593 772 FunFam DNA ligase 400 606 - -
Trre8g01593 772 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 424 432 IPR016059 GO:0003909
Trre8g01593 772 Gene3D - 410 608 - -
Trre8g01593 772 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 60 771 - -
Trre8g01593 772 MobiDBLite consensus disorder prediction 70 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01593 Trre-Chr8 12339499 12346557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01593 37 770 Core DNA Replication Machinery Family AT1G08130 66.711 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01593 K10747 - gmx:100783155 1122.07