Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01592 ATGTCAAAGCCACCACCCTCCGCCTTCGACTTCCTCATGTCCGGCGCACGCGCCGCCGCCTCCAAGAAGAAACCTCCTCCTCTTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTCCCCCTCCTCCTTCTCCATCCCCACTCTCCCCTCCCGCTCAAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCTTCCAAGGGGATAATTACCGAATTGAAGGAGCTAGTTCCACAGCTGAAGAAGAAACCACCGAGTTTCGATCCAAGTTCTGTGGTTTGCTGGGAGAAAGACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCATTCGACATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACGGTCATATACATTACACCGGAGGATCTTGTTCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACCAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATCAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAACAAATTAGGAATCAGTATAAGGAAAAAGGTGATTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAAGAAGGTTTTCAATACTTTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACTAAATTGCGAATCGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCCAAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAATTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACGGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCAAGCTCTTCTTCAGGAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCATTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTAATCATTAAAACATTACATGAAGACGCCACATATGAACCCTCAAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCTGTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGTGGTAAACGTACAGGAGTGTACGGTACTTATCTCGTTGCGTGCTATGACAAAGAGAACGAAGAATTTCAAAGTCTTGCCAAGTTAGCAACTGGATTCACAGAAGAGGAGCTTGAAGAACGTTCTGCTATCCTTCGCTCTAAAATTATTCCCAAACCAAAGACATATTATAAATGTGGAGAATCAATCAACCCTGATGTCTGGTTTGAAGATAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACTATTAGCCCTGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAGGGCATATCTCTTCGGTTTCCACGTTTTGTTCGAGTTCGGCCTGACAAAGCTCCTGACCAGGCCACTTCGTCTGAGCAGATTGCTGAAATGTATAATAAGCAAAAACACAACCAGACCAACAACCAGGATGACGATGAAGATGATGATTAA 2208 0.4298 MSKPPPSAFDFLMSGARAAASKKKPPPLSSSSPKKRKSPPPPPPPSPSPLSPPAQNPNNNLKTLETVETVEPPNKIRNTSSSSSKGIITELKELVPQLKKKPPSFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYITPEDLVPVVYLSANRIAPAHQGLELGIGDASIIKALAEACGRTEQQIRNQYKEKGDLGLVAKASRSSQSMMRKPEPLTIKKVFNTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPKIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGQALLQENLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSVDLVPIGAFHGRGKRTGVYGTYLVACYDKENEEFQSLAKLATGFTEEELEERSAILRSKIIPKPKTYYKCGESINPDVWFEDSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRFVRVRPDKAPDQATSSEQIAEMYNKQKHNQTNNQDDDEDDD 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01592 735 Gene3D DNA ligase/mRNA capping enzyme 391 516 - -
Trre8g01592 735 MobiDBLite consensus disorder prediction 1 84 - -
Trre8g01592 735 Pfam DNA ligase N terminus 120 295 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01592 735 FunFam DNA ligase 362 568 - -
Trre8g01592 735 ProSitePatterns ATP-dependent DNA ligase signature 2. 540 566 IPR016059 GO:0003909
Trre8g01592 735 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 386 394 IPR016059 GO:0003909
Trre8g01592 735 ProSiteProfiles ATP-dependent DNA ligase family profile. 468 604 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01592 735 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 28 734 - -
Trre8g01592 735 Gene3D - 97 364 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01592 735 CDD Adenylation_DNA_ligase_I_Euk 351 569 - -
Trre8g01592 735 Gene3D - 372 570 - -
Trre8g01592 735 NCBIfam ATP-dependent DNA ligase 178 717 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre8g01592 735 Gene3D - 571 734 IPR012340 -
Trre8g01592 735 CDD OBF_DNA_ligase_I 574 719 - -
Trre8g01592 735 Pfam ATP dependent DNA ligase C terminal region 591 702 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre8g01592 735 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 103 352 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01592 735 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 354 572 - -
Trre8g01592 735 SUPERFAMILY Nucleic acid-binding proteins 574 720 IPR012340 -
Trre8g01592 735 MobiDBLite consensus disorder prediction 55 84 - -
Trre8g01592 735 MobiDBLite consensus disorder prediction 705 723 - -
Trre8g01592 735 FunFam DNA ligase 571 730 - -
Trre8g01592 735 MobiDBLite consensus disorder prediction 32 54 - -
Trre8g01592 735 FunFam DNA ligase 97 364 - -
Trre8g01592 735 Pfam ATP dependent DNA ligase domain 362 566 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01592 735 MobiDBLite consensus disorder prediction 701 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01592 Trre-Chr8 12330429 12337199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01592 1 734 Core DNA Replication Machinery Family AT1G08130 65.775 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01592 K10747 - gmx:100783155 1102.04