Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01591 ATGTTGGCATTGCATTTCAAACCGTATTTTTCTCTTCCGTTATTATTCCGAATTTCCGTTAATAATTCTTCTTCTTACAGTTTAACATTTCCTCTCTCACTAACCCCTCGCAGCAAAATGTCAAAGCCACCACCCTCCGCCTTCGACTTCCTCATGTCCGGCGCACGCGCCGCCGCCTCCAAGAAGAAACCTCCTCCTCTTTCTTCCTCATCTCCCAAGAAACGAAAATCCCCTCCCCCTCCCCCTCCTCCTTCTCCATCCCCACTCTCCCCTCCCGCTCAAAACCCTAACAACAATCTCAAAACCCTAGAAACCGTTGAAACTGTTGAACCACCGAACAAGATCCGCAACACTTCATCTTCTTCTTCCAAGGGGATAATTACCGAATTGAAGGAGCTAGTTCCACAGCTGAAGAAGAAACCACCGAGTTTCGATCCAAGTTCTGTGGTTTGCTGGGAGAAAGACAAACCTGTGCCATTTTTGTTCCTTTGTTTAGCATTCGACATGATTAACGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGCAATCTGTTGAGGACGGTCATATACATTACACCGGAGGATCTTGTTCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACCAAGGGTTAGAATTGGGAATTGGCGATGCTTCTATTATCAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAACAAATTAGGAATCAGTATAAGGAAAAAGGTGATTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAAGAAGGTTTTCAATACTTTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACTAAATTGCGAATCGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCCAAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTAAGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCAATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAATTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTGGAGATTTACAGTAGAAATGCTGAAAGGAACACGGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCAAGCTCTTCTTCAGGAAAACCTTAAAATCCGTAGAGAGCATCTCTACGCCTCATTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTAATCATTAAAACATTACATGAAGACGCCACATATGAACCCTCAAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCTGTAGATTTGGTACCTATTGGTGCTTTCCACGGTCGTGGTAAACGTACAGGAGTGTACGGTACTTATCTCGTTGCGTGCTATGACAAAGAGAACGAAGAATTTCAAAGTCTTGCCAAGTTAGCAACTGGATTCACAGAAGAGGAGCTTGAAGAACGTTCTGCTATCCTTCGCTCTAAAATTATTCCCAAACCAAAGACATATTATAAATGTGGAGAATCAATCAACCCTGATGTCTGGTTTGAAGATAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTGACTATTAGCCCTGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAGGGCATATCTCTTCGGTTTCCACGTTTTGTTCGAGTTCGGCCTGACAAAGCTCCTGACCAGGCCACTTCGTCTGAGCAGATTGCTGAAATGTATAATAAGCAAAAACACAACCAGACCAACAACCAGGATGACGATGAAGATGATGATTAA 2325 0.4262 MLALHFKPYFSLPLLFRISVNNSSSYSLTFPLSLTPRSKMSKPPPSAFDFLMSGARAAASKKKPPPLSSSSPKKRKSPPPPPPPSPSPLSPPAQNPNNNLKTLETVETVEPPNKIRNTSSSSSKGIITELKELVPQLKKKPPSFDPSSVVCWEKDKPVPFLFLCLAFDMINEESGRIVKTDIVCNLLRTVIYITPEDLVPVVYLSANRIAPAHQGLELGIGDASIIKALAEACGRTEQQIRNQYKEKGDLGLVAKASRSSQSMMRKPEPLTIKKVFNTFHLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPKIKSPFEEAAQIVKKVYSVLPDYDKIVAALLKDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDLLYLNGQALLQENLKIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSVDLVPIGAFHGRGKRTGVYGTYLVACYDKENEEFQSLAKLATGFTEEELEERSAILRSKIIPKPKTYYKCGESINPDVWFEDSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRFVRVRPDKAPDQATSSEQIAEMYNKQKHNQTNNQDDDEDDD 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01591 774 Gene3D DNA ligase/mRNA capping enzyme 430 555 - -
Trre8g01591 774 ProSiteProfiles ATP-dependent DNA ligase family profile. 507 643 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01591 774 MobiDBLite consensus disorder prediction 744 762 - -
Trre8g01591 774 ProSitePatterns ATP-dependent DNA ligase signature 2. 579 605 IPR016059 GO:0003909
Trre8g01591 774 CDD Adenylation_DNA_ligase_I_Euk 390 608 - -
Trre8g01591 774 FunFam DNA ligase 136 403 - -
Trre8g01591 774 MobiDBLite consensus disorder prediction 55 99 - -
Trre8g01591 774 MobiDBLite consensus disorder prediction 71 93 - -
Trre8g01591 774 FunFam DNA ligase 610 769 - -
Trre8g01591 774 Gene3D - 136 403 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01591 774 CDD OBF_DNA_ligase_I 613 758 - -
Trre8g01591 774 Gene3D - 411 609 - -
Trre8g01591 774 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 65 773 - -
Trre8g01591 774 SUPERFAMILY Nucleic acid-binding proteins 613 759 IPR012340 -
Trre8g01591 774 NCBIfam ATP-dependent DNA ligase 217 756 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre8g01591 774 MobiDBLite consensus disorder prediction 740 774 - -
Trre8g01591 774 Pfam DNA ligase N terminus 159 334 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre8g01591 774 Pfam ATP dependent DNA ligase C terminal region 630 741 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre8g01591 774 Gene3D - 610 773 IPR012340 -
Trre8g01591 774 FunFam DNA ligase 401 607 - -
Trre8g01591 774 Pfam ATP dependent DNA ligase domain 401 605 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre8g01591 774 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 425 433 IPR016059 GO:0003909
Trre8g01591 774 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 393 611 - -
Trre8g01591 774 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 142 391 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01591 Trre-Chr8 12330312 12337199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01591 1 773 Core DNA Replication Machinery Family AT1G08130 63.191 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01591 K10747 - gmx:100783155 1126.69