Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01589 ATGGAAACTATACGAGAAATTGAAAATTTTGGCTGCACACATTATAGAAGGAGATGCAAGATCATAACACCATGTTGTAATGAAGTTTTTGGCTGTAGGCACTGCCACAATGAAGCTAAGAACTCAGATGAGATTGACCCCGTTGATCGTCATGATATCCCGCGGCATGAAGTTGAAAAGGTTATATGCTCCTTGTGTGATACAGAGCAAGATGTTCAACAATACTGCATAAATTGTGGAATTTGTATGGGAGAGTACTTTTGTGGTACATGCAAATTCTTTGATGATGATATTTCTAAGCAACAATATCACTGTGATGAATGTGGCATCTGCAGGACTGGTGGCAAGGATAATTTTTTCCATTGCAAAAGATGTGGATGTTGCTATTCCAAGGACCTAAAAGAGAGACATCATTGTATAGAAAGAGCAATGCATCATAATTGTCCTATTTGCTTTGAGTATTTATTTGACACATTAAGAGAATCTAGCGTCTTACCTTGTGGCCATACTATACATCTTGATTGTGTTAAAGAGATGGAAAAACATCGTAGGTACAAATGTCCTGTTTGCTCAAAATCCATTTGTGATATGTCAAGTGTGTGGAAGAAACTTGATCAAGCGGTTTCCTCAACTCCAATGCCTGAATCCTACAGAAATAAGAAGGTATGGATACTTTGCAATGATTGTGGTGTAAACTCTCATGTGCAATTCCACATTGTGGGACATAAGTGTTTAAGTTGCAATTCATACAACACAAGGCAAATACAAGGAATACCATCTAGCAGCTCAATGTCTTCTAGGGTGACAGAGATGGTTAATTAG 822 0.3783 METIREIENFGCTHYRRRCKIITPCCNEVFGCRHCHNEAKNSDEIDPVDRHDIPRHEVEKVICSLCDTEQDVQQYCINCGICMGEYFCGTCKFFDDDISKQQYHCDECGICRTGGKDNFFHCKRCGCCYSKDLKERHHCIERAMHHNCPICFEYLFDTLRESSVLPCGHTIHLDCVKEMEKHRRYKCPVCSKSICDMSSVWKKLDQAVSSTPMPESYRNKKVWILCNDCGVNSHVQFHIVGHKCLSCNSYNTRQIQGIPSSSSMSSRVTEMVN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01589 273 SUPERFAMILY CHY zinc finger-like 9 82 IPR037274 GO:0008270
Trre8g01589 273 Pfam RING-type zinc-finger 148 188 IPR027370 -
Trre8g01589 273 Pfam CHY zinc finger 12 93 IPR008913 GO:0008270
Trre8g01589 273 SMART ring_2 148 190 IPR001841 -
Trre8g01589 273 Gene3D - 221 261 - -
Trre8g01589 273 ProSiteProfiles Zinc finger RING-type profile. 148 191 IPR001841 -
Trre8g01589 273 SUPERFAMILY RING/U-box 146 196 - -
Trre8g01589 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 220 IPR013083 -
Trre8g01589 273 ProSiteProfiles Zinc finger CHY-type profile. 5 81 IPR008913 GO:0008270
Trre8g01589 273 FunFam RING finger and CHY zinc finger domain-containing protein 1 219 263 - -
Trre8g01589 273 Pfam Zinc-ribbon 195 253 IPR039512 -
Trre8g01589 273 SUPERFAMILY Zinc hairpin stack 84 141 IPR037275 -
Trre8g01589 273 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 256 - -
Trre8g01589 273 ProSiteProfiles Zinc finger CTCHY-type profile. 83 147 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01589 Trre-Chr8 12315855 12318316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01589 6 266 C2H2 Transcription Factor Family AT3G18290 39.630 1.82e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01589 K10144 - gmx:100812709 498.819