Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01588 ATGGATTTTTATCAAGAGAATCTTGCTCACATTAACAATGATTTTGAGTTACATGATTTCATTGATGATCCAAACTTTGATCAATTCATCAATTTGATTCGTGGTGAGGAGAATGAAGATACTACTATTAGTAACTTCAATTCTGACCTCATAAATCCAACTTTTGTTGATAACTCATTCATTTCATTTCCTTCAAACCCATTTGATCAACACATAAATAACTCTATCACCCCTTTTGATCCAACTTCTTCACTTAACTCTTTCTCTTGTTTTGATGGAGAAACTAAGGGAGAAAGTGGAGAAAATGATGGAGATAATTACTCATCTCCAACAACAACTAACACCACAACAACTACAAGTGTTGATACTAAGCCAAGGGGGAAAACTGATAGATCGAAAACATTGGTTTCTGAGCGGAGGAGGCGAGGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTAGTTCCCAACATAACTAAGATGGATAAGGCTTCTATAATTGGAGATGCTGTTTCATATATGTGTGAACTCCAATCACAAGCCAAGAAGCTCAAAGCAGAGGTTGCAGGACTTGAAACATCATTAGCAATGTCCAAAAATTATCAAGGATCAATTGAAAACCACAAAAAGATTCAATTCAATGGTAACAATGGTTCAATATGCAAGAAGATTATTCAGATGGATATGATTCAAGTGGATGAAAGAGGGTTTTATGTTAAAATTGTTTGCAATAAAGGAGAAAGAGTGGCTTCTTCATTATACAAGTCTCTTGAATCATTGAGAGATTTCAATGTTCAGAATTCAAATTTGGCCACTATTCCTGATGGTTTTCTACTTACATTTTCATTGAATGTGAAAAACTCTGAGCAAGAAATCAACCTGCCAAATTTAAAGCTATGGGTGATCAGTGCTTTTCTAAACCAAGGCTTTGAATTGATACCTTCTTTTCGATCTTGA 960 0.35 MDFYQENLAHINNDFELHDFIDDPNFDQFINLIRGEENEDTTISNFNSDLINPTFVDNSFISFPSNPFDQHINNSITPFDPTSSLNSFSCFDGETKGESGENDGDNYSSPTTTNTTTTTSVDTKPRGKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYMCELQSQAKKLKAEVAGLETSLAMSKNYQGSIENHKKIQFNGNNGSICKKIIQMDMIQVDERGFYVKIVCNKGERVASSLYKSLESLRDFNVQNSNLATIPDGFLLTFSLNVKNSEQEINLPNLKLWVISAFLNQGFELIPSFRS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01588 319 MobiDBLite consensus disorder prediction 90 140 - -
Trre8g01588 319 Gene3D - 121 195 IPR036638 GO:0046983
Trre8g01588 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Trre8g01588 319 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 125 195 - -
Trre8g01588 319 MobiDBLite consensus disorder prediction 124 140 - -
Trre8g01588 319 SMART finulus 135 184 IPR011598 GO:0046983
Trre8g01588 319 MobiDBLite consensus disorder prediction 102 123 - -
Trre8g01588 319 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 308 - -
Trre8g01588 319 Pfam Helix-loop-helix DNA-binding domain 137 179 IPR011598 GO:0046983
Trre8g01588 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01588 Trre-Chr8 12304226 12306156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01588 13 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 54.723 1.98e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g01588 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01588 K26214 - gmx:100805451 392.504