Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01586 ATGGGAGAACTAGTTATGGAGGAACAAAAACTGATGAATTTTTCTAACAAAGATGCAACTCATATTGCCAAAGGAAAACGCACCAAGAGGTTAAGACTTTTATCTCCTTGTGGTGTTGTTTCTACTGGTATCACATCTAGTGAAGAAAATGAGTATTTTGATGATGAAATTGAAGATAATGATGATGTTGAAGAAGATATGGCTAATTGTTTGATTCTCCTTGCTCAAGGTGGAAATCACAAGCAACATAGTGATGATGATGATGACAAAAGGGAAAAGGGTAGTAATGGAAATAAAAAAATTACTCAGATTGTAACTGCAACTGCTGCTACAACAAAAGCTGGTCTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCTTTGGGTGGTCATAGAGCAAGTCATAAAAAGCCCAAAATTATGTCTGAAGAGAAAAAACTACCATCATCGCCACTGTCCTCAGTCTCATCACATGATTCGCAGTCAATTAAACTGGTTGCGAATCGTGATGAGTTTGAAGAATCTGAGAAACCTCGCGGGCCTACGATTTCTTTTCAAATGGGGAATCAAGGATTGAAAGGTATTAATGGGAACAAGGCTAAGATTCATGAGTGTTCTATTTGTGGATCAGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGACATAGGACATCCTCCGCAAACACCTCTGTCGCGGAGGAGAGAGGAGTTCGACCGCAAAATATTTTACAATTTGATCTTAACCTTCCGGCTCCCGAAGAGGATATCCGGGAATCAAAATTTCAATTTCCGGCTACACAAAAATCCATGGTGATGTCTGCTGCTCCGACTTTGGTGGGTTGTCATTATTAA 879 0.3914 MGELVMEEQKLMNFSNKDATHIAKGKRTKRLRLLSPCGVVSTGITSSEENEYFDDEIEDNDDVEEDMANCLILLAQGGNHKQHSDDDDDKREKGSNGNKKITQIVTATAATTKAGLYIYECKTCNRTFPSFQALGGHRASHKKPKIMSEEKKLPSSPLSSVSSHDSQSIKLVANRDEFEESEKPRGPTISFQMGNQGLKGINGNKAKIHECSICGSEFTSGQALGGHMRRHRTSSANTSVAEERGVRPQNILQFDLNLPAPEEDIRESKFQFPATQKSMVMSAAPTLVGCHY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01586 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Trre8g01586 292 MobiDBLite consensus disorder prediction 76 99 - -
Trre8g01586 292 SUPERFAMILY beta-beta-alpha zinc fingers 118 231 IPR036236 -
Trre8g01586 292 MobiDBLite consensus disorder prediction 170 184 - -
Trre8g01586 292 MobiDBLite consensus disorder prediction 135 196 - -
Trre8g01586 292 Gene3D Classic Zinc Finger 193 253 - -
Trre8g01586 292 Gene3D Classic Zinc Finger 81 178 - -
Trre8g01586 292 Pfam C2H2-type zinc finger 209 233 - -
Trre8g01586 292 Pfam C2H2-type zinc finger 119 144 - -
Trre8g01586 292 MobiDBLite consensus disorder prediction 153 169 - -
Trre8g01586 292 MobiDBLite consensus disorder prediction 80 97 - -
Trre8g01586 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Trre8g01586 292 PANTHER ZINC FINGER PROTEIN ZAT5 47 275 - -
Trre8g01586 292 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Trre8g01586 292 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Trre8g01586 292 SMART c2h2final6 209 231 IPR013087 -
Trre8g01586 292 SMART c2h2final6 119 141 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01586 Trre-Chr8 12279446 12280324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01586 18 292 C2H2 Transcription Factor Family AT2G28200 40.705 2.52e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g01586 zf-C2H2_6 3.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01586 - - aprc:113858527 294.278