Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01572 ATGGGATTCTACAATCGCAGGTTGCTCTTACTGAACGAGGATGTTCCAATCTCAACATCCACATTCATTTCACCTTACCCTCAAATCCAACCAAACAGATCCTCACCGTCCATTTCAATAACTCCATTATCATCACCACCATCCAAAACATTCACCCCACCTTTACAATTACAATTACCATTTCATCCAATTTTCTCATCCAACATAGCCTACACTTCCCTCCTTCTTTTCTCCACTCTTTTCTTCGTCTTTTTCGTTCTCTTATCAATTCGTGAACTCTCACACCGTCGCCGCCGTGGTTTTCCGCCGTCAAAGGGTTTAGATCTCGCCGCCGTGAAGTCACTGCCGGTTTGTGAGTATAAGGAAGATGTGAAGCAGCCGGACTGTGTGATTTGTTTGGAAGAGTTTGGAGAGTGTGATGCGGTGAAGATGATTCCGTTTTGTAAGCACGTGTTTCATCCTGAATGTATTGACACGTGGCTTTCTAAGCACGTGACGTGTCCTATTTGCAGGTGTGTTATTATGAATGAGCATGGTGGAATAAGATCAACGGTGGAGAATGGAGGTTGA 570 0.4421 MGFYNRRLLLLNEDVPISTSTFISPYPQIQPNRSSPSISITPLSSPPSKTFTPPLQLQLPFHPIFSSNIAYTSLLLFSTLFFVFFVLLSIRELSHRRRRGFPPSKGLDLAAVKSLPVCEYKEDVKQPDCVICLEEFGECDAVKMIPFCKHVFHPECIDTWLSKHVTCPICRCVIMNEHGGIRSTVENGG 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01572 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 176 IPR013083 -
Trre8g01572 189 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Trre8g01572 189 SUPERFAMILY RING/U-box 114 176 - -
Trre8g01572 189 Pfam Ring finger domain 128 171 IPR001841 -
Trre8g01572 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 179 - -
Trre8g01572 189 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01572 Trre-Chr8 12138567 12139136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01572 99 171 C3H Transcription Factor Family AT2G27940 56.000 1.95e-23 91.7