Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01561 ATGTCTCGTCGCGGTGGAGGAAACAACCCTGATAACCGCCGTAACCAACCAAAACCATCTCCGTCTCCTGGTGGTGGTCGTGGCTCTACCGGTGGACTTAACGTTCCATCTTCATCGTCGCCGAACGTACGTCCTCCGGCTTCTTCTCCGGCACCGATCACGGTCACCGCTGCTCCATCTGTTGCTGCTTCTGTTGCCGGCTCTAGTTCGGCTCCTCCGACTCATCCTTCTCCGGCGACGGTTTCAACCGAAGCTCTCACCGCTGAAGTTCAACAGAAGCTCTCTCTATCGGCACCGGCGTCTCAGAAGGCGATCAGGTTTCCTAACCGTCCTGGTTATGGTCAGTTAGGGAAAAAAATTCAAGTTCGTGCTAATCATTTCCGGTTGCAAGTTGCTGATAGGGATCTACATCACTACGATGTGTCGATTGCGCCGGAGATTACTTCGAAAAAAGTGTCTAGAGATATTATCAATCAGTTGGTTAAGATGCATCGGGAGTCGGTGTTAGAGAATCGCATTCCTGCTTATGATGGAAGGAAGAGTCTGTTTACTGCTGGTCCATTACCTTTTACTTCTAAGGTTTTTGTGGTTAACTTGGTTGACGAGGATCGGGGATCCTCTTCTGGTTCTGATAGGAAAAAGCGTGAACGGGAGTTCAAGGTTACGATTCGGTTTGCTTCAAAGACGGACATTGTCCATCTTACTCAGTTTCTTCGCCGTTTGCAGCCGGATTGTCCTTATGAAACCATACAAGTTCTTGATGTTGCTTTGCGGGCGACTCCAGCTGAAAAGTACACTGTTGCGGGGAGATCATTTTTCTCACCCAATTTGGGGGCACCTGGGCCTCTTGGCGGTGGAACAGAATATTGGAGAGGCTTTTATCAAAGTCTTAGGCCAGCACAAATGGGACTTCCACTCAACATTGATGTATCTTCAAGGGCTTTCTACGAACCGGTTCTCGTGACTGAATTTATTTCTAAAAATTTTAAATTGAATTTTTCAAGGCAGCTGTCCGACCAAGACCGTCTCAAGATCAAGAGAGCCTTGAGAGGTCTTAAGCTACGGCTATCTCATGGAGCGGGAACCAGGAGTTGCAAGGTGACCGGTGTCTCAAAAGAGCCACTCAAAGACCTAATGTTTACATTGGAAGACAAAGTAACTAGGAAAAGAGTTGTGGATTATTTTTATGAGAAATACAAAATTCAGTTAAAGTATCCACATCTTCCTGCTATCCAATCTGGAAGTGACGCAAGACCTATGTATTTTCCAATGGAGCTTTGTCAAATTGAGGCTGGACAAAGGTACTCCAAAAGATTGAATGAAGAGCAAGTAACTAACCTTCTAAGGGCGACGTGCCAGCGTCCTTATCAGAGAGAACAAGATATTAAAAATATCGTGAAGCAGCACCGCTTCAACTCAGACAAGGTTGTTGCTGAATTTGGGATCAATGTAAAAGAAGATCTCACTCTGGTCGATGCTCGTGTTTTGCCACCCCCCACGCTCAAATATTATGGAACTGGTGGAGAATCAAAGCTTGACCCTCGAATGGGTCAATGGAATATGATCAGTAAGAAAATGGTCGATGGTGGCAATGTTCAATTTTGGAGTTGCCTCTGCTTTTCAGGAATGGACCCAACTCTGTTTTGCGAAGAGTTGGTTAGTATGTGTCAAGCCAAGGGACTGGTTTTCAACCGAGAACCTGCAGTACCTTTATCCCCAGGCAATCCTAGTCAAATTGAGAAAGAGCTTGTGAATTTTAACAAGCGGTGTAGGGCAATACTTGATAGCAAACAACAGAGGCTTCAGTTGCTGATAATAATTTTGCCTGATCGCAAGCTTGCAGGGACTTATGATAAAATAAAGCGTGTATGTGAAACTGAACTGGGAATTGTTTCTCAATGTGTTCAGCCAAAGCAAGCTCAAAAGTTGCAAAAGCAGTATCTTGAAAATTTGTCCTTAAAGATTAATGTCAAGGTTGGTGGTCGTAACACTGTCTTGAATGATGCATTTGAGAGAAGAATTCCTCTTGTAACTGATAAACCAACTATAATATTTGGTGCGGATGTAACACATCCACAACCAGGGGAAGATTCCAGTCCCTCTATAGCTGCAGTGGTGGCATCCATGGATTGGCCTTGGGTCACCAAGTACAGGGGAGTTTTTTCTGCCCAGTCTCATCGGGAAGAAATTATTCAGGATCTGTATAAAACTGTACAACATCCTCAGAGGGGTATTTTGCATACTGGAATGATAAGGGAGCTAATTATATCTTTCTACAAGTCAACTGGGCGTAAGCCTGAGAGGATTATATTTTACAGAGATGGAGTAAGTGAAGGGCAGTTTAATCAGGTTTTGCTTTATGAGATGGATGCAATCCGAAAGGCTTGTGTCTCGATAGAGAATGAGTATCTACCTCCAGTTACTTTTGTGGTGGTCCAAAAGAGACATCATACCCGCCTCTTTCCTGTCAAAAAGGAAGAGTCCGACAGAAGTGGAAATATAATGCCAGGAACTGTGGTCGACACCAGCATTTGCCACCCCAGAGAATTTGATTTTTATCTGAACAGCCATGCTGGGATTCAAGGTACTAGTCGACCAGCTCATTATCATGTGTTGTTTGATGAAAATCGTTTCACTGCAGATCAGTTACAGAGTTTGACCAATAATCTGTGTTACACTTATGCTAGATGTACTCGATCAGTGTCAATAGTTCCTCCTGCTTATTATGCACACTTGTTAGCTTTCCGTGCTCGCTACTACCTTAGTGATGCTACTGCTGCTGATACTTCTGATTCTGGTTCTGCAAGTGGTACTAGGAGTGCCACCAACGTTGTAGCAGCACTTCCCTCACTCATTGAAAGTGTCAAAGACAACATGTTTTATGTTTGA 2889 0.4431 MSRRGGGNNPDNRRNQPKPSPSPGGGRGSTGGLNVPSSSSPNVRPPASSPAPITVTAAPSVAASVAGSSSAPPTHPSPATVSTEALTAEVQQKLSLSAPASQKAIRFPNRPGYGQLGKKIQVRANHFRLQVADRDLHHYDVSIAPEITSKKVSRDIINQLVKMHRESVLENRIPAYDGRKSLFTAGPLPFTSKVFVVNLVDEDRGSSSGSDRKKREREFKVTIRFASKTDIVHLTQFLRRLQPDCPYETIQVLDVALRATPAEKYTVAGRSFFSPNLGAPGPLGGGTEYWRGFYQSLRPAQMGLPLNIDVSSRAFYEPVLVTEFISKNFKLNFSRQLSDQDRLKIKRALRGLKLRLSHGAGTRSCKVTGVSKEPLKDLMFTLEDKVTRKRVVDYFYEKYKIQLKYPHLPAIQSGSDARPMYFPMELCQIEAGQRYSKRLNEEQVTNLLRATCQRPYQREQDIKNIVKQHRFNSDKVVAEFGINVKEDLTLVDARVLPPPTLKYYGTGGESKLDPRMGQWNMISKKMVDGGNVQFWSCLCFSGMDPTLFCEELVSMCQAKGLVFNREPAVPLSPGNPSQIEKELVNFNKRCRAILDSKQQRLQLLIIILPDRKLAGTYDKIKRVCETELGIVSQCVQPKQAQKLQKQYLENLSLKINVKVGGRNTVLNDAFERRIPLVTDKPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPWVTKYRGVFSAQSHREEIIQDLYKTVQHPQRGILHTGMIRELIISFYKSTGRKPERIIFYRDGVSEGQFNQVLLYEMDAIRKACVSIENEYLPPVTFVVVQKRHHTRLFPVKKEESDRSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPAHYHVLFDENRFTADQLQSLTNNLCYTYARCTRSVSIVPPAYYAHLLAFRARYYLSDATAADTSDSGSASGTRSATNVVAALPSLIESVKDNMFYV 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01561 962 Gene3D - 674 962 IPR036397 GO:0003676
Trre8g01561 962 CDD Piwi_ago-like 475 921 IPR045246 -
Trre8g01561 962 Gene3D paz domain 313 435 - -
Trre8g01561 962 ProSiteProfiles PAZ domain profile. 319 431 IPR003100 GO:0005515
Trre8g01561 962 SUPERFAMILY Ribonuclease H-like 590 922 IPR012337 -
Trre8g01561 962 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 99 923 - -
Trre8g01561 962 CDD PAZ_argonaute_like 321 429 - -
Trre8g01561 962 ProSiteProfiles Piwi domain profile. 603 922 IPR003165 GO:0003676
Trre8g01561 962 SMART Piwi_a_2 603 922 IPR003165 GO:0003676
Trre8g01561 962 FunFam protein argonaute 10-like 673 962 - -
Trre8g01561 962 Pfam PAZ domain 340 448 IPR003100 GO:0005515
Trre8g01561 962 Pfam Argonaute linker 2 domain 457 503 IPR032472 -
Trre8g01561 962 Pfam Argonaute linker 1 domain 269 317 IPR014811 -
Trre8g01561 962 Gene3D - 495 668 - -
Trre8g01561 962 SMART DUF1785_2 266 318 IPR014811 -
Trre8g01561 962 SUPERFAMILY PAZ domain 314 471 IPR036085 GO:0005515
Trre8g01561 962 FunFam Argonaute 10 495 667 - -
Trre8g01561 962 MobiDBLite consensus disorder prediction 1 23 - -
Trre8g01561 962 MobiDBLite consensus disorder prediction 1 55 - -
Trre8g01561 962 Pfam N-terminal domain of argonaute 118 257 IPR032474 -
Trre8g01561 962 Pfam Piwi domain 604 920 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01561 Trre-Chr8 12026299 12031810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01561 47 961 Eukaryotic Initiation Factors Gene Family AT1G48410 54.497 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01561 K11593 - gmx:100799033 1179.47