Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01559 ATGGAGAGAAAAGGTATCAACAACAATGATTACACTTCAGAAGATGAAGGCACTGAACACTATAGGCGTGGTGGTTACCATCCCGTTAAAATTGGTGATTCTTTCAACAATGCTCGTTATCTTATTCAATCTAAGCTTGGTTGGGGTCATTTTTCCACTGTTTGGCTTGCTTCCGACACTCTCAAATCGCGTTATGTGGCCCTTAAAATTCAAAAGAGCGCGCAACACTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAAGTTGAAGAGGGAGACCCTGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGTATACATGTGTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAATATAGTGACTATCGTGGAGTTCCGCTTTCCATGGTTAAAGAAATATGTTTTCATATTTTGGTGGGCTTGGATTATTTGCACCGCGAGCTTTCTGTCATACACACTGATTTGAAGCCAGAGAATGTGTTGCTTCATTCACTGATAGATCCGTGTAAGGATCCAAGGAAATCAGGTGCTCCACTTATCCTTCCAAACACCAAGGATAAGGCTTTGTCTAATAATGGCACCATCCAAAACAGTAAAATTGGGAATGGAGATTCAACAAAGAACCAGAAGAAAATGCAGGGAAACGCTAAGAGGGTGGCTCAAGGCTGTATTGAGAAGGAAAGTCCAGAGGAAGCTGCGGAGGACTATAAAGAACCCGAGCACGAAAATCGTAAAAATCATGTGAAATCAAGTGTAGAATCTTCTGAAAATAAACCCAATAGTTCTTTCAGTGAGGGTGAATCAACACAAACTTTTGAAAAGGATGTTGCACAAGGAAATCATGGTCATAGGAAAGGTAGCCGTTCCGTGAGAAAGAAACTGCTGGCAGCTGTTGATCTTAAATGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACTTATAAACAGTTCACAAATGATATTCAGACAAGGCAATATAGGTGCCCCGAGGTTCTTCTAGGATCTAAATACTCTACTCCAGCAGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACAGGAGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCACTGATGATGGAACTTCTTGGAAAGATGCCTAGCAAGATTGCACTCGGTGGTCGCTATTCCCGAGAATTTTTTAATCGACATGGTGAATTGAGGCACATCCGCGACTTGCGATTCTGGCCACATCATAAGATTCTGACAGAAAAGTATAATTTCAGCGAACAAGATGCAAATGACATGGCTGACTTCCTTCGTCCAATACTTGATTTTGACCCTGAAAAGAGACCAACAGCTGCTCAGTGCCTTAGCCATCCATGGTTCATTGCAGGACCCAGAACTCTTGAGCCCTCACCGACTACTATGCAACCTGATGGAATCAACAGGGATTCATTTGAAAAGAGAAATAAGAAAAAGGAAAAGGCTGAGCACGAGTTGGTGGAACTTGGTGTGAAGAATATAGCCATTGATGGATCTCCTGTGTCACTCAAGGACTCCCAACCTGTAAAGTCATTAACATAG 1635 0.4171 MERKGINNNDYTSEDEGTEHYRRGGYHPVKIGDSFNNARYLIQSKLGWGHFSTVWLASDTLKSRYVALKIQKSAQHYTEAAMDEIKILKQVEEGDPDDKKCVVKLLDHFKHSGPNGIHVCMVFEFLGDNLLTLIKYSDYRGVPLSMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLHSLIDPCKDPRKSGAPLILPNTKDKALSNNGTIQNSKIGNGDSTKNQKKMQGNAKRVAQGCIEKESPEEAAEDYKEPEHENRKNHVKSSVESSENKPNSSFSEGESTQTFEKDVAQGNHGHRKGSRSVRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGKMPSKIALGGRYSREFFNRHGELRHIRDLRFWPHHKILTEKYNFSEQDANDMADFLRPILDFDPEKRPTAAQCLSHPWFIAGPRTLEPSPTTMQPDGINRDSFEKRNKKKEKAEHELVELGVKNIAIDGSPVSLKDSQPVKSLT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01559 544 SUPERFAMILY Protein kinase-like (PK-like) 36 493 IPR011009 -
Trre8g01559 544 ProSiteProfiles Protein kinase domain profile. 40 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01559 544 SMART serkin_6 40 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01559 544 MobiDBLite consensus disorder prediction 193 305 - -
Trre8g01559 544 MobiDBLite consensus disorder prediction 202 232 - -
Trre8g01559 544 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Trre8g01559 544 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 11 508 - -
Trre8g01559 544 MobiDBLite consensus disorder prediction 1 23 - -
Trre8g01559 544 CDD STKc_SRPK 28 479 - -
Trre8g01559 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Trre8g01559 544 FunFam CMGC/SRPK protein kinase 26 125 - -
Trre8g01559 544 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Trre8g01559 544 Pfam Protein kinase domain 42 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01559 544 Pfam Protein kinase domain 316 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01559 544 MobiDBLite consensus disorder prediction 485 510 - -
Trre8g01559 544 MobiDBLite consensus disorder prediction 270 293 - -
Trre8g01559 544 MobiDBLite consensus disorder prediction 240 269 - -
Trre8g01559 544 Gene3D Transferase(Phosphotransferase) domain 1 123 479 - -
Trre8g01559 544 FunFam Serine/threonine-protein kinase SRPK-like protein 309 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01559 Trre-Chr8 12008774 12012404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01559 9 530 EF-hand Containing Proteins AT5G22840 66.667 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre8g01559 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01559 K08832 - gmx:100790060 862.062