Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01554 ATGGATAAACCTAACGGGAGATCGAGAGGTCGTCCTAAAAAACGACGAAAGGAAGATGAAAGGGAGGGGAAACCGGTTGCTGATGGTAAAAGACAACCGGTGGAGGCCAAACAGATAGCATTGGTTGGCCGCTATGTTCTGAAAGAGTTCCCTGAGAATGGGACTTTTCTGGGCAAAGTCATCTATTATGACACTGGCCTGTATAGAGTGAATTACGAAGATGGCGATTTCGAAGACTTAGAAAGTGGCGAAATCCGTCCCATACTTATCAGGGACGATGATTTTGATGCTGGCTTAGCCAAGAGGAGGACTAAGCTGGAGAAAGTAGTGGCCAAGAATAGTGGCAAGGCGGCAGATGTAGCTGAGAAGGTTTCAGGGAAATCTGGTATGGAGGAATCTGCTGCTGGTGTGACTGCTCCGAGTGATTTGAACGGAGAATTATCAATTGAAGTTGCCAAGGAGGAAGATGATGGAGCAGATACTGAAATTTCAAGTGAGTCTGTTCCTGATGTTGAGACAGCACCTTTGCCGCCACCGTTCCAGTTGCCGTTGTCATCGGGAACTATCGGTGTGCCGGAGCACAGCGTCTCCCATCTCTTTTCCGTTTACGGATTCTTAAGAACCTTCAGCACACAACTGTTTCTCCATCCTTTTAGTTTGGATGAGTTTGTTGGTTCTTTGAACTGCGAAGTCTCGAATACCTTGTTTGATGCTATTCACTTCTCTTTGATGCGGGTGTTAAGGCGTCATCTTGAAACACTGTCGTCTGAGGGATCGGAGCTTGCATCGCAATGCCTTAGGTGCAACGATTGGAGCTTGCTTGATACATTGACTTGGTCTGTTTTTGTGATTCTGTATTTGGTGGTTAAAGGGTATACCAAAGGACCTGAATGGAAGGGATTTTACGATGAGGTTTTTAGAAGTGAGTATTATTTGTTGCCTGTAAGTAGGAAGTTAATGATACTGCAAATTCTTTGTGACGATGTTTTGGAATCTGAGGAGCTAAAAACTGAAATGAACATGCGGAAGGAATCAGAGGTCGGTATGGATTATGATGCAGAAGATATCCTTCCTGCAGAAATGGGACCCAGAAAAGTCCATCCAAGATATACCAGAACCTCTTTTTGTGAGGATAAAGAAGCTATCAAATTGGTTTCAGCGTCAAATGCTGTGAACCAACCTAGTAACTCTATTTCGTATTGCAGAGATACAGAAAGCACCGGAGATGGGGATTTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGTATGGATGGAACCCTTCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGATGAAAAGTTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATCAATATGACTGGGCCCACAATTGCAAAGGGAACCTCACTTAGAGGGGCCGAAATATTTGGAAAGGATTTGTATGGGCAGCTCTTCATGGGTACATGCGACCACTTGCTTGTGCTTAATATTGGCAACAATGAAGTTTGTCTTAGATATTACAATCGGAAGGACATCCCTAAAGTTGTCCAACTGCTTTATGAATCCACGCTGCATAGGCCAATGTACTATGGTATTTGCATGGCAGTGCTACAATACTGGAATATTTCAGAAAACTTCTTACCTCTTCCTGCTTCAACTGAAACAAATATGAAGGATGAGACAGAATTTTCTGCCCCTTTACTTTCTCCTCCAAGTGAAGACAACCATAAACCCGTTAGTTTGGTCAAGGGAGAGAATTCTACAACCACTGCGAGTTTGATTCACAATGATATGGTGCCTTCTCTTGATGGTTTGCAAGTTAGCACTCAAAGTCCTGGTCTTCATAGCAGTGGCATTGTTAGGAGTGAAGAGGGCCTTACTGTGGTTGATAACATTGCTGCGGAAACTAGGACAGAGGCAATAATTTCAGCTGGTCTTGTTAGCCATCAGTCCGACCCGAACTTGCAGAACTCTGTCAACATGTCAACTACAGTAGATGCTGCTAAGTTCTCTTTGGTGAAAAGTCAATTAAGTAATTGCGGCCATGCAAATGATATGGGGCTGCCTTTGAATTTTTCTTTGCTAAACAAAGAAAACACCCCAGTAGGCTTTGGAAAGTCTGAAAGCAATGCATATGATGACTTTTGTTACTTCGGTTTCTCCTATAAACCCACATCATACATAAACTGCTATATGCATGGTGACTTTTCTGCATCAGCAGCTGCCAAATTTGCCATGATTTCTTCAGAGGAGTCTAGGTCAGAAGGTCATGGATCAGATAGCCATAAAAAAACCGTATCTGCATATACTTACTTGCAAGCAAAAGCATTCTCACTAGCAGCATCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCCGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCTTTTCCTGTAAAGCCAATGTTGCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTAATAAGTGCCACAAAAAGTGCCATGAAAATCCTTGCTAAATTTTCTCCTTTAAGGAGTGGAGATGGAAGCTTACCTAGCACCATTGCAACATACATTTTATATATGGAGAAATGTTTACATGGTTTAGTCGTTGGGCCCTTCATAAATGCAAGCTATAGAAACAACTGGCGTAAGCAAGTGGAACAGGCCACAACACTTGGTGCTCTCAAGCCACTTCTACTTGATCTTGAGGAGAACATTAGAACCATTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATCGGTTGGTTGAGTTTTCCATTATACAAAGTGCCACATCTACTCAAGGAACAACTCAGAAACGTGCACCAAGTGGGAGGCGTTATAAAAAGAGGTCATCTATTGATGAAGCTATAGATGATAGTTCCCAGGAAGGAATGTGGTGGCGTGGTGGCAAAGTTACCAAATTTATATTTCAGAATGTAGCTTTGCCGAAATCCATGGTCAGAAAAGCAGCTCGCCAAGGTGGTTCGAGGAAAATTTTGGGTATTTCCTATGCCGATGGCTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGAAATGCCTCACAGCTGGCACTCCAGGTCAGATACCTAGATTCTAATCTTAGATGGAGTGATTTGATTCGTCCAGAGCAGAACATACAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCCGAAATGCGAATATTTATGATAAAAAACTTGTTGATGGAAAAATTTGGTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTCCTAATAGGGTGATGAAAAGTGTTGTTGAAAAAGAGCAAATTTCAGAAGGAAAAGAAAAGTATTGGTTTTCTGAAACTAGAATTCCTTTATATTTGATAAAAGAGTATGAAGAAGGTAATGAAAAGGTGCCATGTGAAGAGCACTGTAGTGGTGCATCTCAGTTGAACAGAAGGCAGTTGAAAGGTACCTGCAAGGACATATTCTTTTACCTCCGTTGCAAGAGGGACAACTTGGAATTCTCGTGTTCTTCATGTCAGATGGGAATTTCAATTCGGAATGCTCACAAGTGTAATTCATGTCAAGGTTATTGTCATGAGGACTGTTCCATAAGTTCAGTTTCTCTCCTCTCTACAAATGGGGAACTTGAACGCTTGACCACATGCAAACAATGTCACCGTGCCAAGTTACTTGCTCCAAACATAATTAGTGATGAATCTCCAACCAGTCCTTTAATCTTACAAGGACAGGAAAACAGCTCTGGGACTATTTTCAAGGGATCAAGGCCGAAGGCTGTTCATTCTGATACAAAACAAGTTAATTCCGTGTCAGTTTCGAAAGGATCGAAGCGTAAATGTCCTGATCAAACTTTGAGTTCTACCAGGAAAAAAAAAGCTCATCCTGATACCCATCAAGCTGCGTCTGATTCCAATTTGGTAGAATCAAGCAGCCGTCGCAACAATAATTGTTCTTGGGGTCTTATATGGAAAAAGAGAAGTAATGAAGAAAACACTGATTTTAGGATAAAAAACATACTTTTAAAGGGAGGATCAAACATGCCTGATCTATCTCCTGTTTGCAACTTATGTTCAAAGGCATATAGGGATGACCTAATGTATATTCGCTGCGAGACATGCCAAAATTGGTTTCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCGACTTTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTGTGTCCGTACGCAGAGCCAAAACCTAAGTCAGAAGTTAAGAAATCACGCCGAAGAGCTGCAAAGAAAGAACAGTCTGCAGCCAATTCTGATTCCGGAACATTCAATGATATCAGAGATTCTGAACCTGCTACTCCTGTCTTTCCTGTGGAGAGTGATCCTTTACTTTTTGCTCTTGCAAATGTTGAGCTGATTACAGAATCTAATAAATTAGATTTGGATGTTCAGCGGAACACTGCCTCTGTGCCAGGGCCGCAGAAATTGCCAGTTAGAAGGCATGTTAAGCATGAGGGGGATGATGATAGTTCTGTTGCAGGAATTACTTTACAGGCTGAATTTTCAACACACAGCGAAGCAGGTTATCTGTCCAATCCTGCAGAGTCGGAACTACCTTTAGAATACGACTCTGCTGTTTTTGACAGCAATCTGCCGAACAACTATGAGTTTGGAAATGATCAATCTTATGATGAGAAGAATCCCAATCTCTATTTCGATATAAATGAACTTCTATGCACAGGTGAAGGCCAGATTGATGAAGGCCAGATTGATGGAGGTGATTTGTCTATGGATTTGTTGAAATATGATAATGAGAATTCTGGTGCCGCTGTTCCTGAAGAATTTGAGAATTCTGGTGCCGCTGTTCCTGAAGAATTTGAGAATTCTGGTGCCGCTGGTCCTGAAGAATTTGAGAATTCTGGTGCCGCTGTTCCTGAAGAATTTGGAGAATTTGAAGATTTTGGAGAATTTGAAGAGAACATTTATTGCAGTATATGTTTACAAAATGGACCAGGTCTTGATCGTTTTTGTGACACATGCGGGATTTTGTGTCACAGCAATTGTTTGCCTTGGCCTGAACCAGTTTCTGATGATGAAAATTGGAAGTGTATGAATTGCCGGGATTGGCAATAA 5160 0.4198 MDKPNGRSRGRPKKRRKEDEREGKPVADGKRQPVEAKQIALVGRYVLKEFPENGTFLGKVIYYDTGLYRVNYEDGDFEDLESGEIRPILIRDDDFDAGLAKRRTKLEKVVAKNSGKAADVAEKVSGKSGMEESAAGVTAPSDLNGELSIEVAKEEDDGADTEISSESVPDVETAPLPPPFQLPLSSGTIGVPEHSVSHLFSVYGFLRTFSTQLFLHPFSLDEFVGSLNCEVSNTLFDAIHFSLMRVLRRHLETLSSEGSELASQCLRCNDWSLLDTLTWSVFVILYLVVKGYTKGPEWKGFYDEVFRSEYYLLPVSRKLMILQILCDDVLESEELKTEMNMRKESEVGMDYDAEDILPAEMGPRKVHPRYTRTSFCEDKEAIKLVSASNAVNQPSNSISYCRDTESTGDGDFDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKSFIPEGPWYCPECKINMTGPTIAKGTSLRGAEIFGKDLYGQLFMGTCDHLLVLNIGNNEVCLRYYNRKDIPKVVQLLYESTLHRPMYYGICMAVLQYWNISENFLPLPASTETNMKDETEFSAPLLSPPSEDNHKPVSLVKGENSTTTASLIHNDMVPSLDGLQVSTQSPGLHSSGIVRSEEGLTVVDNIAAETRTEAIISAGLVSHQSDPNLQNSVNMSTTVDAAKFSLVKSQLSNCGHANDMGLPLNFSLLNKENTPVGFGKSESNAYDDFCYFGFSYKPTSYINCYMHGDFSASAAAKFAMISSEESRSEGHGSDSHKKTVSAYTYLQAKAFSLAASRFFWPSSEKKPVEVPRERCGWCFSCKANVASKRGCMLNHALISATKSAMKILAKFSPLRSGDGSLPSTIATYILYMEKCLHGLVVGPFINASYRNNWRKQVEQATTLGALKPLLLDLEENIRTIAFCGDWVKLMDDRLVEFSIIQSATSTQGTTQKRAPSGRRYKKRSSIDEAIDDSSQEGMWWRGGKVTKFIFQNVALPKSMVRKAARQGGSRKILGISYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDSNLRWSDLIRPEQNIQDGKGQETEASAFRNANIYDKKLVDGKIWYGIAFGSQKHLPNRVMKSVVEKEQISEGKEKYWFSETRIPLYLIKEYEEGNEKVPCEEHCSGASQLNRRQLKGTCKDIFFYLRCKRDNLEFSCSSCQMGISIRNAHKCNSCQGYCHEDCSISSVSLLSTNGELERLTTCKQCHRAKLLAPNIISDESPTSPLILQGQENSSGTIFKGSRPKAVHSDTKQVNSVSVSKGSKRKCPDQTLSSTRKKKAHPDTHQAASDSNLVESSSRRNNNCSWGLIWKKRSNEENTDFRIKNILLKGGSNMPDLSPVCNLCSKAYRDDLMYIRCETCQNWFHAEAVELEESKISTLLGFKCCKCRRIKSPVCPYAEPKPKSEVKKSRRRAAKKEQSAANSDSGTFNDIRDSEPATPVFPVESDPLLFALANVELITESNKLDLDVQRNTASVPGPQKLPVRRHVKHEGDDDSSVAGITLQAEFSTHSEAGYLSNPAESELPLEYDSAVFDSNLPNNYEFGNDQSYDEKNPNLYFDINELLCTGEGQIDEGQIDGGDLSMDLLKYDNENSGAAVPEEFENSGAAVPEEFENSGAAGPEEFENSGAAVPEEFGEFEDFGEFEENIYCSICLQNGPGLDRFCDTCGILCHSNCLPWPEPVSDDENWKCMNCRDWQ 1719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01554 1719 PANTHER PHD FINGER FAMILY PROTEIN 35 1432 - -
Trre8g01554 1719 CDD PHD2_CHD_II 419 460 - -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1272 1293 - -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1294 1309 - -
Trre8g01554 1719 CDD PHD_SF 1671 1715 - -
Trre8g01554 1719 Pfam DDT domain 194 250 IPR018501 -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1 33 - -
Trre8g01554 1719 ProSitePatterns Zinc finger PHD-type signature. 419 460 IPR019786 -
Trre8g01554 1719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 465 IPR013083 -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 937 957 - -
Trre8g01554 1719 SUPERFAMILY FYVE/PHD zinc finger 407 466 IPR011011 -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1425 1442 - -
Trre8g01554 1719 Coils Coil 1715 1719 - -
Trre8g01554 1719 SMART PHD_3 1364 1412 IPR001965 -
Trre8g01554 1719 SMART PHD_3 1180 1231 IPR001965 -
Trre8g01554 1719 SMART PHD_3 1671 1716 IPR001965 -
Trre8g01554 1719 SMART PHD_3 418 461 IPR001965 -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1262 1324 - -
Trre8g01554 1719 CDD Tudor_AtPTM-like 42 90 IPR047365 -
Trre8g01554 1719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1359 1418 IPR013083 -
Trre8g01554 1719 SMART testlast3 193 253 IPR018501 -
Trre8g01554 1719 SUPERFAMILY FYVE/PHD zinc finger 1660 1716 IPR011011 -
Trre8g01554 1719 CDD PHD_TCF19_like 1364 1411 - -
Trre8g01554 1719 SUPERFAMILY FYVE/PHD zinc finger 1360 1420 IPR011011 -
Trre8g01554 1719 Pfam PHD-finger 419 461 IPR019787 -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1 31 - -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1310 1324 - -
Trre8g01554 1719 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 297 340 IPR028942 -
Trre8g01554 1719 MobiDBLite consensus disorder prediction 1423 1461 - -
Trre8g01554 1719 ProSiteProfiles DDT domain profile. 193 253 IPR018501 -
Trre8g01554 1719 ProSiteProfiles Zinc finger PHD-type profile. 416 463 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01554 Trre-Chr8 11959971 11967483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01554 283 562 EF-hand Containing Proteins AT5G22760 48.421 3.31e-77 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trre8g01554 DDT 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01554 - - tpra:123920021 2957.93