Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01552 ATGTTTCCTTTCCTACAACTACAAGGAGGTGTATCTGTTGAATTAACAGGTTTGGAACCCCATGTGCTGACCGTCAATCCTGGAGAGGATGTAATTGCAAAGATATATGCATTTCTTCAAAACGATCCTTTTGCTGCTGTTTATATACTATGTGCTGTTGGCACTGTATCAAGTGTTGTCCTTCAACAACCTGGTTGCTTTGGCAACTTCAACTCCTCAAAACGGGCTCAATTAGAGAATGAAGTGTTAGGCTCTAATAGTTCCCGTCAGCTAGTTTCTGGTTTACGATCAAACAACTTTCCTTTTGCTGAAGAGAAAAGATATTCGTAG 330 0.403 MFPFLQLQGGVSVELTGLEPHVLTVNPGEDVIAKIYAFLQNDPFAAVYILCAVGTVSSVVLQQPGCFGNFNSSKRAQLENEVLGSNSSRQLVSGLRSNNFPFAEEKRYS 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01552 109 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 68 IPR039605 GO:0003680
Trre8g01552 109 Pfam Plants and Prokaryotes Conserved (PCC) domain 20 60 IPR005175 -
Trre8g01552 109 SUPERFAMILY AF0104/ALDC/Ptd012-like 16 66 - -
Trre8g01552 109 ProSiteProfiles PPC domain profile profile. 15 109 IPR005175 -
Trre8g01552 109 Gene3D - 20 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01552 Trre-Chr8 11941481 11945043 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01552 20 68 AT-hook Motif Nuclear Localized (AHL) Family AT4G00200 48.980 1.57e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01552 - - mtr:25492323 70.8626