Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01551 ATGGAAGATCAAAACTTGAACCTACCTGCTGCCATGTCCCCAACCTCAACCCAAGATGGGTCAGAAACCAACAACAACGTCCCTGTTGCAACTGAAGTTGCCAGAGTTGTTGATGTTGGCTCTGACACCGGAGCAAAGTCCGGACCTGCTCCAGGTTCGAACTTTCCTCCCATGAAAAGGGGACGTGGAAGACCTCGGAAGCATGAGGTACGTGGGAACCAGCCGGCTCCAGTACAAGTGACACCGGCACCAGAGCTTGCTATTCAGCCCTTTGGAAGTGAGGAGAAGCGTGGAAGGGGACGTCCTCGTGGTTCTGGAAAACTTCAGATGTTGGCTTCCATTGGTGGATATGTTGCTGTAACAGCTGGAGGAAATTTCACACCTCATGTGCTGACTGTTAACCCTGGAGAGGACGTCGTTGCAAAAATATTTGCATTTTTTCGAAATGCTCCTCGAGTTGCTTCTTGTGTAATCTCTGCTGCTGGCACTGTATCAAGTGTCATCCTTCGCCAACCTAATTCTGGCGTTTTTGTAAGACATGAGGGCCACTTTGAAATTTTATCCTTAAGGGGATCATGCACTTTCACTAGTGGTGCTGTTGCTGGTGGTTCACAGAGAAAAATTAGCATGTTGAGTGTTTCATTGGCTAAATCTGATGGAACAATTTTTGGAGGTTCTATTGAGAACTCAATGATTGCTGCTACTCCTATTCCACTGATTATGGCAACTTTCATTCAAAATATAAGCCAACAAATCAAGAGGAAATACGCATCTCCTTCTTCAACTGCTCCAAACATGCTGCCGAACTCGAAAGCTCCGAAGTTAACTATGGAACAAGGAGAACCTAGCTGCCAAACAGGAAATGCAACTGCAACTTCTAATGGTGTAGCTGTTGCAGATATCAATGTGACATTAGCTGAAGCAACTAATGCTGTGTCTGTTTCAGAAAATGTCACTACTATTGCTGATGAAAATGCTCATTCCGATTCCGTTGGTGGTGGTGCTGGTTTTGACCTTGAGAGCCAGATTCCTGAAACAAACCATACAACATCTCCTTAA 1059 0.4542 MEDQNLNLPAAMSPTSTQDGSETNNNVPVATEVARVVDVGSDTGAKSGPAPGSNFPPMKRGRGRPRKHEVRGNQPAPVQVTPAPELAIQPFGSEEKRGRGRPRGSGKLQMLASIGGYVAVTAGGNFTPHVLTVNPGEDVVAKIFAFFRNAPRVASCVISAAGTVSSVILRQPNSGVFVRHEGHFEILSLRGSCTFTSGAVAGGSQRKISMLSVSLAKSDGTIFGGSIENSMIAATPIPLIMATFIQNISQQIKRKYASPSSTAPNMLPNSKAPKLTMEQGEPSCQTGNATATSNGVAVADINVTLAEATNAVSVSENVTTIADENAHSDSVGGGAGFDLESQIPETNHTTSP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01551 352 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Trre8g01551 352 SMART AT_hook_2 59 71 IPR017956 GO:0003677
Trre8g01551 352 PRINTS AT-hook-like domain signature 94 105 IPR017956 GO:0003677
Trre8g01551 352 PRINTS AT-hook-like domain signature 59 69 IPR017956 GO:0003677
Trre8g01551 352 MobiDBLite consensus disorder prediction 256 289 - -
Trre8g01551 352 CDD DUF296 127 244 IPR005175 -
Trre8g01551 352 MobiDBLite consensus disorder prediction 324 352 - -
Trre8g01551 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 251 - -
Trre8g01551 352 ProSiteProfiles PPC domain profile profile. 123 270 IPR005175 -
Trre8g01551 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 245 IPR005175 -
Trre8g01551 352 MobiDBLite consensus disorder prediction 1 80 - -
Trre8g01551 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 293 IPR039605 GO:0003680
Trre8g01551 352 Pfam AT hook motif 96 106 IPR017956 GO:0003677
Trre8g01551 352 Pfam AT hook motif 59 69 IPR017956 GO:0003677
Trre8g01551 352 MobiDBLite consensus disorder prediction 1 30 - -
Trre8g01551 352 Gene3D - 128 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01551 Trre-Chr8 11905629 11909749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01551 58 254 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 38.208 1.32e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01551 - - mtr:25492323 358.992