Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01543 ATGGAAGCACCAATGGAGTTTTGGGGTGCTGAGGTTAAAGTTGGACAATCTGTTAAAGTTGATCCAGATGATGAACAATATGAGGGATATATCCACATTTCTCAGGTTGCACTCGGGGAAGTGAAGAAAGGCAAAGCAACTGAACCGGTTGTTGTGTATGTGAAAGTTGATGATCAGAAGCTTGTTCTGGGAACTCTTATTAAGGATGAAATTCCTCAGATATCTTTGGATATAGTTCTAGAAAAGGAGGCTGAACTTTCCCACAATTCAAAAAATGCTGCTGTCTATTTTTCTGGATACAAAGTTTTTCGTGGCATGGATGAAGATGATGAAGACGCTGACTTTTCTGATAGTGATGGTGAACTTGCTCCTATGAGGGAACGTGTTGAAGCTGCAAAGGAGCTTGCTAAATCTGGAAAACCTGCTGCTCAAACTGGTGCAGTGGCAAAGCAAGTCAAGATTATTGATCCAACGAGTGGTAAGACTGTTGACCCAGAGGAGATTAAAGACTTATCTGGTGATGAATCAGATTCTGATTTTTCTGAGGAGTTCAATTCTGATAGTGAGGACGGTGAAAGTGAAGAAGAGACTCCGGCTAAGAAGGTGGATCAGGGCAAGAAGAACAAGGGAACAAATGAGAATGCACCAAAAGCTCCAGTTCCTACCAAGAAGGCTAAAATTGCTACTCCTGAAAAGACTGATTCTGATGTTGATTCCAGTGATGAAGATATTAGTGATGAAGATATTAGCGATGAAGATATTAGTGATGATGATAGTAGTGATGAAGAGACTCCTGTTCAGAAGGGCAAGAACAACAAGAGACCAAATGAGGCTGGACCACAAACTCCAGTTTCTGCCAAGAAAGCTAAAAATGCTACTCCTGGAAAGACTGGTGATGGTAAAAAAGGTGTACACATAGCCACTCCCCATCCTATGAAGAAAGGTGGAAAAACTCCTCAGAATGCTGCTAAGAACCAGTCTCCCAGTTCTAACAAGTCAAAAAAGTCCAACCAAGGTCGTCGTTGA 1026 0.4172 MEAPMEFWGAEVKVGQSVKVDPDDEQYEGYIHISQVALGEVKKGKATEPVVVYVKVDDQKLVLGTLIKDEIPQISLDIVLEKEAELSHNSKNAAVYFSGYKVFRGMDEDDEDADFSDSDGELAPMRERVEAAKELAKSGKPAAQTGAVAKQVKIIDPTSGKTVDPEEIKDLSGDESDSDFSEEFNSDSEDGESEEETPAKKVDQGKKNKGTNENAPKAPVPTKKAKIATPEKTDSDVDSSDEDISDEDISDEDISDDDSSDEETPVQKGKNNKRPNEAGPQTPVSAKKAKNATPGKTGDGKKGVHIATPHPMKKGGKTPQNAAKNQSPSSNKSKKSNQGRR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01543 341 MobiDBLite consensus disorder prediction 156 341 - -
Trre8g01543 341 MobiDBLite consensus disorder prediction 194 210 - -
Trre8g01543 341 MobiDBLite consensus disorder prediction 319 334 - -
Trre8g01543 341 SUPERFAMILY Nucleoplasmin-like core domain 5 80 IPR036824 -
Trre8g01543 341 Pfam Nucleoplasmin-like domain 7 101 IPR041232 -
Trre8g01543 341 FunFam Histone deacetylase HDT1 5 105 - -
Trre8g01543 341 MobiDBLite consensus disorder prediction 236 260 - -
Trre8g01543 341 Gene3D Nucleoplasmin core domain 2 104 - -
Trre8g01543 341 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01543 Trre-Chr8 11808797 11812544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01543 5 101 C2H2 Transcription Factor Family AT3G44750 53.061 2.40e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01543 - - psat:127103750 297.745