Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01538 ATGAGATTGGAGAAGTGCTGGTTCTGTTCTTCTACTGTATATCCTGGACATGGAATCCAGTTTGTTCGTAATGATGCAAAGATTTTTAGATTCTGTAGATCTAAGTGCCACAAGAACTTTAAAATGAAGAGGAACCCTCGTAAAGTAAAATGGACCAAGGCATATAGGCGGGTGCATGGAAAGGATATGACACAGGATTCAACATTCGAGTTTGAGAGAAAGCGCAACAGGCCTGAGAGATATGACAGGAATCTTGCTGAAAATGTCCTCAAGGCCATTCCAAAGATTGATAAGATCAGAGTTAGCAGGGAAGAGAGTCACCACAAGAATAGGATGAAGGGCAAGAAGCAGAAGGCGCACAAGGAAGATGAAAAGGAGTATAAAGATTTCATCCATATTATTAATGCTCCTTCTGTGCATGAAAATGAGAAGATCAAAGTCGTGGTGTCCCAACCACAGCCAGAAGAAAATCGTGCCATGGAAGAGTGA 489 0.4172 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAENVLKAIPKIDKIRVSREESHHKNRMKGKKQKAHKEDEKEYKDFIHIINAPSVHENEKIKVVVSQPQPEENRAMEE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01538 162 PANTHER 60S RIBOSOMAL PROTEIN L24 1 146 IPR000988 -
Trre8g01538 162 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Trre8g01538 162 SMART 4TRASH 6 44 IPR011017 -
Trre8g01538 162 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Trre8g01538 162 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Trre8g01538 162 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Trre8g01538 162 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Trre8g01538 162 MobiDBLite consensus disorder prediction 100 125 - -
Trre8g01538 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01538 Trre-Chr8 11730674 11732396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01538 1 162 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 70.370 2.78e-81 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01538 K02896 - gmx:100306000 283.493