Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01531 ATGACGACGGAGAACACCGTAACTGTAAACCCTAGCCATGAACAACGACCAAAAGTGGTAGTTATAACAGGCCCCACCGGTTCTGGAAAATCAAAGCTAGCCGTTGATTTGGCCTCACACTTCCCAATCGAAGTAATCAACGCCGATTCCATGCAAGTATACAGTGGACTCGATATTCTCACCAACAAAATCCCATTCTCTGAACAAAACGGAGTGCCGCATCATCTATTGGGTACTGTAAACCCTAATTTTGAATTCACTGCCAAAGCTTTTCGTGATTCTGCTATTCCCATCATTGATGCTATATTGTCTAGGAACAACATACCTGTTATTGTTGGTGGTACTAATTACTATATACAGGCTCTTGTGAGTTCGTTTCTGTTAGATGATTCAACAGATGATTTGAATGAAAGCTATTTGGGTGACTCACCTGGTATCACAGGGTATGATAATGATTTGTGTTCAGAAAATGATAGTTCAAGCAACAGTTATGATTTTCTTAAAGATATTGACCCAGTTGCAGCGAATAGAATTCATCCAAATAACCATAGAAAGATAAGTCAATACATTAGTTTGTACTCTCGAACTGGTGTTCTTCCCAGCAAAGTTTTTCAAGGACAGGCAGCCGAGAAGTGGGGTCAAGCTGATAACTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCGTCTCTGCCGGTACTGGACAGATATGTAGAGCAGAGGGTAGATGATATGATGGATGCAGGATTACTCAATGAAGTCTATGACATTTATACTATGAATGCAGATTATACCAGAGGTTTGCGACAGGCCATTGGTGTCCGCGAATTTGAGGATCTTCTACGAACTAGTGTTTTCAAAAACATAAATCAAAAAGAGGTGGAATTAATTGACAGATCAAACTTAGAAAATAGTGAGCCATTGTTTCATGGCAATTTGATGGAGTGGTTGAGATCTTCCTCTGATACTAAATCCACAACTCTTTTGGAAGAAGCAATTGAGAAAGTAAAGGTTAATACCAGGAGACTTGTCCGCCGTCAGAAGAGGATGCTCATTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACAGAATCAATATCGAGCAGATCAAATGATGTATGGATTAGCCAAGTGGTTGAACCTGCCACGAAGATAGTGACATCTTTCCTAAGTGAGAATGGTAGCTTGTCGTCGTCAAATGGCAATGGAACGAAAATAATCCAAAGGGACCTCTGGACTCAATACACATGCAAGGCCTGCAATGACCGGGTTCTTAGAGGATTATATGAATGGGAACAACACATACGTGGGTGTGGGCACCGTAAACGTATTTCTAGTCTCAGGAGCAAGGCAAAAGGTCTTAGTTTTGTGGAACATAAGCATGAATCTTCTGATCGCGAATGCTCAGATATATTGTAG 1434 0.4059 MTTENTVTVNPSHEQRPKVVVITGPTGSGKSKLAVDLASHFPIEVINADSMQVYSGLDILTNKIPFSEQNGVPHHLLGTVNPNFEFTAKAFRDSAIPIIDAILSRNNIPVIVGGTNYYIQALVSSFLLDDSTDDLNESYLGDSPGITGYDNDLCSENDSSSNSYDFLKDIDPVAANRIHPNNHRKISQYISLYSRTGVLPSKVFQGQAAEKWGQADNLRYDCCFISVDASLPVLDRYVEQRVDDMMDAGLLNEVYDIYTMNADYTRGLRQAIGVREFEDLLRTSVFKNINQKEVELIDRSNLENSEPLFHGNLMEWLRSSSDTKSTTLLEEAIEKVKVNTRRLVRRQKRMLIRLQTLFGWDIHYVDSTESISSRSNDVWISQVVEPATKIVTSFLSENGSLSSSNGNGTKIIQRDLWTQYTCKACNDRVLRGLYEWEQHIRGCGHRKRISSLRSKAKGLSFVEHKHESSDRECSDIL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01531 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 260 IPR027417 -
Trre8g01531 477 Hamap tRNA dimethylallyltransferase [miaA]. 19 373 IPR018022 GO:0008033
Trre8g01531 477 Gene3D Classic Zinc Finger 417 460 - -
Trre8g01531 477 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 283 IPR018022 GO:0008033
Trre8g01531 477 FunFam tRNA dimethylallyltransferase 415 458 - -
Trre8g01531 477 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 395 IPR039657 -
Trre8g01531 477 Gene3D - 17 416 IPR027417 -
Trre8g01531 477 FunFam LD10347p 151 208 - -
Trre8g01531 477 Pfam IPP transferase 52 349 - -
Trre8g01531 477 Gene3D - 151 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01531 Trre-Chr8 11671194 11675793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01531 22 450 C2H2 Transcription Factor Family AT2G27760 56.813 4.24e-169 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01531 K00791 - gmx:100792690 677.552