Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01529 ATGGCTTCATCAACTGTCACAGACACAAACAAACCATTCTCAGTTCTCTTTGTATGTCTTGGAAACATCTGTAGAAGTCCAGCTGCTGAAGGGGTTTTCACTGATTTGGTTAAGAAAAGTGGTTTTGATTCTAAGTTCAGAATTGATTCTGCTGGTACAATCAATTATCATGAAGGTAATCAAGCTGATTCAAGAATGAGGGCAGCTTCAAAAAGATGTGGGATTGAGATAACTTCAATTTCAAGGCCAATTAAGTCATCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAATAGAGAGGACATATTGGAAGCTTTTAATAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCCCACAAAAAGGTTAAGTTGATGTGCTCATATTGCAAGAAACATGATGAAACTGAAGTCCCGGATCCTTACTATGGTGGACCTCAAGGTTTTGAGAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGTTGGAAAACATTTTGGCCGAAAATAAACATATACAAGAATCCTAA 546 0.3681 MASSTVTDTNKPFSVLFVCLGNICRSPAAEGVFTDLVKKSGFDSKFRIDSAGTINYHEGNQADSRMRAASKRCGIEITSISRPIKSSDFVEFDLILAMDKQNREDILEAFNRWKFRDPLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDMLEDACESLLENILAENKHIQES 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01529 181 Gene3D - 1 176 - -
Trre8g01529 181 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 3 176 - -
Trre8g01529 181 PRINTS LMW phosphotyrosine protein phosphatase signature 58 74 IPR017867 GO:0004725|GO:0006470
Trre8g01529 181 PRINTS LMW phosphotyrosine protein phosphatase signature 15 32 IPR017867 GO:0004725|GO:0006470
Trre8g01529 181 PRINTS LMW phosphotyrosine protein phosphatase signature 142 157 IPR017867 GO:0004725|GO:0006470
Trre8g01529 181 Pfam Low molecular weight phosphotyrosine protein phosphatase 15 168 IPR023485 -
Trre8g01529 181 CDD LMWPTP 14 169 - -
Trre8g01529 181 FunFam Low molecular weight protein-tyrosine-phosphatase 12 176 - -
Trre8g01529 181 SMART LMWPc_2 13 170 IPR023485 -
Trre8g01529 181 SUPERFAMILY Phosphotyrosine protein phosphatases I 11 171 IPR036196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01529 Trre-Chr8 11656521 11658501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01529 5 175 Protein tyrosine phosphatase (PTP) family AT3G44620 66.495 2.67e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01529 K25307 - qsu:111996756 316.235