Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01528 ATGAAGACACTATACATTAATGGAACAAACCTTATTAATTTACCATTTTGCCACTCTTTCCAAATCCTCTCTCAAAACCCAAATGTCCCATTCTTTGTTTCTTTTCCTTCCAAACAGATTCCAAAGCTAACTTCAAAACCTTATTCCATTTCCTTCAAAAAATCTCACTTTTCTCCAATTCAAGCTTCAATGGCTTCATCAACTGTCACAGACACAAACAAACCATTCTCAGTTCTCTTTGTATGTCTTGGAAACATCTGTAGAAGTCCAGCTGCTGAAGGGGTTTTCACTGATTTGGTTAAGAAAAGTGGTTTTGATTCTAAGTTCAGAATTGATTCTGCTGGTACAATCAATTATCATGAAGGTAATCAAGCTGATTCAAGAATGAGGGCAGCTTCAAAAAGATGTGGGATTGAGATAACTTCAATTTCAAGGCCAATTAAGTCATCTGATTTTGTTGAGTTTGATCTTATTCTTGCTATGGACAAGCAAAATAGAGAGGACATATTGGAAGCTTTTAATAGATGGAAGTTTAGAGATCCTTTACCTGAAGATGCCCACAAAAAGGTTAAGTTGATGTGCTCATATTGCAAGAAACATGATGAAACTGAAGTCCCGGATCCTTACTATGGTGGACCTCAAGGTTTTGAGAAGGTGTTAGATATGCTTGAAGATGCTTGTGAATCATTGTTGGAAAACATTTTGGCCGAAAATAAACATATACAAGAATCCTAA 735 0.3592 MKTLYINGTNLINLPFCHSFQILSQNPNVPFFVSFPSKQIPKLTSKPYSISFKKSHFSPIQASMASSTVTDTNKPFSVLFVCLGNICRSPAAEGVFTDLVKKSGFDSKFRIDSAGTINYHEGNQADSRMRAASKRCGIEITSISRPIKSSDFVEFDLILAMDKQNREDILEAFNRWKFRDPLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDMLEDACESLLENILAENKHIQES 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01528 244 CDD LMWPTP 77 232 - -
Trre8g01528 244 SMART LMWPc_2 76 233 IPR023485 -
Trre8g01528 244 PRINTS LMW phosphotyrosine protein phosphatase signature 78 95 IPR017867 GO:0004725|GO:0006470
Trre8g01528 244 PRINTS LMW phosphotyrosine protein phosphatase signature 121 137 IPR017867 GO:0004725|GO:0006470
Trre8g01528 244 PRINTS LMW phosphotyrosine protein phosphatase signature 205 220 IPR017867 GO:0004725|GO:0006470
Trre8g01528 244 SUPERFAMILY Phosphotyrosine protein phosphatases I 74 234 IPR036196 -
Trre8g01528 244 FunFam Low molecular weight protein-tyrosine-phosphatase 75 239 - -
Trre8g01528 244 Gene3D - 60 239 - -
Trre8g01528 244 Pfam Low molecular weight phosphotyrosine protein phosphatase 78 231 IPR023485 -
Trre8g01528 244 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 12 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01528 Trre-Chr8 11656332 11658501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01528 14 238 Protein tyrosine phosphatase (PTP) family AT3G44620 56.589 8.67e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01528 K25307 - gmx:100797254 340.887