Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01527 ATGAACTCCGATGGCCGCAAATGGGATCGGAAAGATAACCGAATTTCCAAGAAACAGAAACTAATCAACACCGCCGAAGAAGAACTCGAAGCAAAACTAGGGTTTGATATTTTCTCAGAAGGTGAAAAACGACTTGGATGGTTACTCACTTTTTCATCTTCGTCGTATGAGGATGAGGATACCCGCAAAGCCTATAGTTGTGTTGATCTTTACTTTGTTACACAGGATGGGTCCTCATTCAAGACAAAATACAGATTTCGTCCTTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGACGCATACCTGAGACGACGTTATGAAAGCCAGATTGCAGATATTAAAATTGTAGAAAAGGAAGACCTGGATCTTAAAAACCATTTGTCTGGATTGAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTGCAACAACTGATGAATGTGAGGAATGACCTGATGCATGTTGTTGAAAGAAACAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTAACGGGGAGAAGAGAACAAAAACTTCAAGACTTTCTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTCACCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGTCTGTGGTATGATGTTGGTGTGTCCAATGATGGGGTTACACTTGAGAGGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGCGCATTTGATATTGAAACCACAAAACTTCCATTGAAGTTTCCTGATGCTGACTATGACTCAATTATGATGATTTCATATATGGTAGATAGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTTCACTCCGAAGCCCGAGTTTGAAGGGTGTTTCAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTTTCTCATATGCAAGAGGTGAAACCTGGCATCTATGTGACTTATAATGGTGATTTCTTTGACTGGCCATTTCTGGAACGGCGGGCAGCCCATCACGGGTTCAAAATGAGTGATGAACTGGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCCCATTTAGATTGTTTTGCATGGGTTAAACGTGACAGTTATCTTCCTCAGGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCCAAGTTAGGTTATGATCCAGAGGAGGTGAACCCTGAGGACATGGTACGCTTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCTGTTTCTGATGCAGTGTCAACATATTACCTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCCACTATCATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTTCAGTCATACAAGGCTAATGTTATCTGCCCTAACAAGCACCAATCTGATGCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAGTTTTACACTCGAGCCATCTGCCTTTGAGCAATTGATCAACAACCTTGATCGAGACCTACAATATGCTATAAGAGTAGAGGGTAAGATGGATTTGGATTCTGTCTCAAATTATGATGAAGTGAAGAATTCTATCATGGAAAAGCTTGTAAAATTACGAGATGCGCCGATACGTGACGAATGCCCACTCATTTATCATTTGGATGTAGCCGCAATGTATCCAAATATAATTTTAACAAACCGACTTCAGCCTCCATCAATTGTTACAGATGAGATTTGCACTGCATGTGACTTTAACCGTCCAGGAAAGACTTGTCTACGCAAGCTTGAGTGGGTTTGGCGTGGATCAACATTCACGGCAAAGAAAAGTGACTATTATCATCTAAAGAAGCAAATTGAGTCAGAGTTTGTTGATGGGACAAATGAAAGGTCATCAAAATCTTTTCTTGACCTGCCCAAGGCCGAGCAACAAACAAGACTAAAAGAACGTTTAAAGAAATACTGCCAAAAGGCATATAAACGGGTACTTGACAAGCCAGTTACCGAGCTCCGTGAAGCTGGAATCTGCATGCGCGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGGTATGAATATAAAGGCCTTAACAAGGTTTGGAAGGGAAAACTATCAGAGGCCAAAGCCAGTGGAAATTCTATGAAGATCCAAGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCTCACAAATGTATTCTTAATTCCTTTTATGGATACGTAATGCGCAAGGGTGCAAGATGGTATTCTATGGAAATGGCTGGTGTTGTCACATATACTGGTGCAAAAATAATTCAAAATGCTCGCTTGCTGGTTGAGAAAATAGGAAAACCACTTGAACTTGACACCGATGGTATCTGGTGTGCACTTCCTGGATCGTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCTAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGACGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCACAGATCCAAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCATACCTGCTTCGAAGGAGGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGATCCCTTGCGGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATTAAAGTTTTCCAGGCTGAGCTTTTTGAGAACTTTCTCCATGGCTCAACCTTAAAGGAATGCTATTCAGAAGTTGCTTTTGTGGCAAATCGCTGGCTCGATCTTCTTGATAACCAAGGAAATGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTGGTTCTGCAATTCAAAAAATTATAACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGATGATACCTTTAAGTCAATGAACAAGAATGAGAGCTCAAAAAAGTATAATGATTCTAATGGCATGGAGGATGGGATTGTTAATGATATGGAGGACTTTGGAAACAGGGGCAGGGGTTCTACATCCGGACCTAGACCAATTATACGGCATTACAAAGCTAACCATGAACAACATTCAGAGAAATTCAGTGGTCAAGAAGATTCGGAGCAGCATATTGACAGTAGCAACATAGATCAGTCACTTTCACTGTCACAACAAGATGAAATATGCGAAAATGTTGATAGAAATGTAGATTATCAAGGATGGCTTCAAATAAAAAAGAGAAAGTGGAAAAGTATGCTGGGAAAGAGAAAGAAGCAAAGATTGGATAATTCAAAGAGATCTGATAATTTAAATGGCAGTCTTGAACAAACAAATGGTAAGATGAATCACGGCAAAACTAATGTCAGTTCATATTTTAGAAGGAACGAGGTAGTCCTTACACGGTGCCACTGGCAGATAATACAGCTAGTGCACAGTTCACAAGTTGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGATTATGCTCAAGATTCCTATTTCTGTTCCTAGAGTCTTTTATCTTAACTCTAGATCACAAAATGAAGAGTGTTCGGGCAAACGTGTAAACAAGACTCTTCCTCATGGAAGACATAGTTATAACCTGTATGAGGTCACAATTAATGAAGAACAATATAAAGAAGAAAGCAAAAAACTTGCCGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGATTTCAACGCTATAGTCCAGCTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGCCTACAAGAGCCATGGAATTTGAGTGAGTTGCACATGAAGACCACAACAGAATGTGCATATCTTGAACAATCAATATCTTTTTTTTACTTATACCATAGCATCTCAGAGGGACGAGCTGTATATGTTGGATATTTTCCTGGGTCACAAGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACAAGGACTTATCACCAATTTTTCTCGAAAGACAATTTCGTGATGCTTGCAGAGCTTTGTCTATTGAGCCACCTCTGCGGAATGACATTAATTTTAAGGTGGAATATGTTGCACTTGTCAAGGATGCTGAAACAGTAATGCAAAGCACAATAAATGATCACAGGAGTGAACATCATGGGCCTATGGTTGCTGTCATCGAATGCCCAGATGTTCAACGATTAAAACTAGGCATTCGAGCTTTAGATGATTTTCCATGCCTGAGTATTCCTTCTAACGCACGTGATAGTCAATACCAGATACTTGGATGGCAACAAGTTGCGGCTAAACTTGGAATGCAACGTTGTGCGGCATCGGTCCAATGGCTAAATGAGAGAATTGCTCTATCCAGATATGCCCATGTACCACTGGGGAACTTTGAATTTGACTGGCTTATGTTTACAGTGGATACCTTCTTTTCTAGAGCATTGCGTGATAATCAACAGGTGCTTTGGATATCTGATGATGGTTTTCCAGATTTGGGTGGCAACAATGGTGAAGAAAACTGTTTTTTAGATGAGGTGCACCAATCTGTTTGTACGTTTCCTGGAGCTTATAGAAAAGTCACTGTGGAGCTAAAGATACACCACCTGGCTGTAGATGCCCTTTTAAAATGCAACCAAGTTAATGAAATGGAAGGAGGTGCTTTGTTAGGATTGGATCATGAATTTGATTCTGAAGCATTTCCTGTGAATGGTCAGAATGGCTTTGATGAGTCTACTTCATGCACACATGCCTTTCGAGTCCTAAAACATTTGATCCAGCGGTGCCTTTCAGATGCAGTCACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTGTATAGATGGCTTTGCAGCCCTCAATCAAAACTTCATGATCCCGCTCTTCACCAGTTACTCCACAAGGTCATGCAAAAGGTCTTCGCGTTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTTTTTGCAAACTTCTCGAAGATTATTATAGACACGGGAAAATATGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAAAACTATACAATCTAGAGACCTATTCGAGTGGATTGAGCTTGAACCACTGCAGTTTTGGTGCTCATTGCTATTCATGGACCAGTATAACTACGGTGGAATACCAGCAAAGTCTGATGAAGCCATGGATGATGAGTCTCCAGTTGACATAATATCAAGTTGGAATATTGCCGAGTACTTGCCAAAAAAAATCCAAGATCATTATGTTTTCATGGTTTCTCAATTCATGTATATTCCTTGGAACTATGCACGAAAACAAGCAGCGATCAGGGCTTCGGTGCTGAGTGGAGACTCCTGCACCCCATCAATTAATATTGGAGCTGCAGAGGCTTTTGAATCAGAAATAACTGAATATATTAAAGAACAGATTAGCTCTTACTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGATGGGCAGATCAGAAAACGATCTGAGTACATCATCTGGCCTTCCTCAACTGGCGGGTGATCTCCATAGAGGGGATGCAGCCTTGGAGTTTATCAAACATGTCTGTGCCGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTCACGTCATGAGAAAAAATTTGTTAAAATATGTTCGTGTCAGGGAGTTTGCTCCAGAAGCAGAGTTTCACGATCCTTGTCATTCCTTCACATTACCCAATGTTATCTGCAGCTATTGTAATGACTGCAGAGATTTGGACTTGTGCCGTGATCCGACTTTATTGACCGAAGAGTGGCATTGTGGCCAACCTCACTGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAGATTGCACGACAAAGGGAGCGGCAATACCACTTGCAAGATCTCGTGTGTGTCAGGTGCAACCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAAGTGCAAGGAAGATGCAACAGAATTTCGCAAAAAGATGCTGGTTATCTTCAACATAGCTTCTCGTCAGAAATTCCAACTTCTTCAAGAATGTACCTCCTGGATGTTAGAACTCAAAATTTAA 6621 0.4066 MNSDGRKWDRKDNRISKKQKLINTAEEELEAKLGFDIFSEGEKRLGWLLTFSSSSYEDEDTRKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMNVRNDLMHVVERNKAKSDAAEAYESILTGRREQKLQDFLDCIIDLREYDVPHHVRFAIDNDIRCGLWYDVGVSNDGVTLERRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSIMMISYMVDRQGYLIINRECVGDDIEDLEFTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGFKMSDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYKANVICPNKHQSDAEKFYKNHLLESETYIGGHVECLESGVFRSDIPCSFTLEPSAFEQLINNLDRDLQYAIRVEGKMDLDSVSNYDEVKNSIMEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGSTFTAKKSDYYHLKKQIESEFVDGTNERSSKSFLDLPKAEQQTRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQAELFENFLHGSTLKECYSEVAFVANRWLDLLDNQGNDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMNKNESSKKYNDSNGMEDGIVNDMEDFGNRGRGSTSGPRPIIRHYKANHEQHSEKFSGQEDSEQHIDSSNIDQSLSLSQQDEICENVDRNVDYQGWLQIKKRKWKSMLGKRKKQRLDNSKRSDNLNGSLEQTNGKMNHGKTNVSSYFRRNEVVLTRCHWQIIQLVHSSQVGQFFAWVVVDGIMLKIPISVPRVFYLNSRSQNEECSGKRVNKTLPHGRHSYNLYEVTINEEQYKEESKKLAALLADPDVEGIYETKVPLDFNAIVQLGCVCKVDKTAKKRSLQEPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAVYVGYFPGSQAITFVVVNPYQNKDLSPIFLERQFRDACRALSIEPPLRNDINFKVEYVALVKDAETVMQSTINDHRSEHHGPMVAVIECPDVQRLKLGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFEFDWLMFTVDTFFSRALRDNQQVLWISDDGFPDLGGNNGEENCFLDEVHQSVCTFPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGLDHEFDSEAFPVNGQNGFDESTSCTHAFRVLKHLIQRCLSDAVTSGNVYADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLKTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMDDESPVDIISSWNIAEYLPKKIQDHYVFMVSQFMYIPWNYARKQAAIRASVLSGDSCTPSINIGAAEAFESEITEYIKEQISSYFTDKLLGVVRDIVLHMKGMGRSENDLSTSSGLPQLAGDLHRGDAALEFIKHVCAVLALDQSVQHDVHVMRKNLLKYVRVREFAPEAEFHDPCHSFTLPNVICSYCNDCRDLDLCRDPTLLTEEWHCGQPHCGQPYDREVMENALLQIARQRERQYHLQDLVCVRCNQVKAAHLAEQCACAGSFKCKEDATEFRKKMLVIFNIASRQKFQLLQECTSWMLELKI 2206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01527 2206 SMART DUF1744_2 1507 1891 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Trre8g01527 2206 FunFam DNA polymerase epsilon catalytic subunit 941 1125 - -
Trre8g01527 2206 MobiDBLite consensus disorder prediction 1266 1298 - -
Trre8g01527 2206 Gene3D DNA Polymerase, chain B, domain 1 52 225 - -
Trre8g01527 2206 MobiDBLite consensus disorder prediction 1207 1226 - -
Trre8g01527 2206 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Trre8g01527 2206 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2203 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Trre8g01527 2206 MobiDBLite consensus disorder prediction 1279 1298 - -
Trre8g01527 2206 MobiDBLite consensus disorder prediction 1207 1225 - -
Trre8g01527 2206 Pfam Domain of unknown function (DUF1744) 1525 1891 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Trre8g01527 2206 MobiDBLite consensus disorder prediction 1156 1170 - -
Trre8g01527 2206 FunFam DNA polymerase epsilon catalytic subunit 752 937 - -
Trre8g01527 2206 MobiDBLite consensus disorder prediction 1156 1175 - -
Trre8g01527 2206 SUPERFAMILY Ribonuclease H-like 58 467 IPR012337 -
Trre8g01527 2206 Pfam DNA polymerase family B 753 1064 IPR006134 GO:0000166|GO:0003677
Trre8g01527 2206 Gene3D Palm domain of DNA polymerase 755 937 IPR023211 -
Trre8g01527 2206 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Trre8g01527 2206 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Trre8g01527 2206 SUPERFAMILY DNA/RNA polymerases 486 1115 IPR043502 -
Trre8g01527 2206 CDD DNA_polB_epsilon_exo 240 443 - -
Trre8g01527 2206 CDD POLBc_epsilon 503 1122 - -
Trre8g01527 2206 Gene3D - 238 468 IPR036397 GO:0003676
Trre8g01527 2206 Gene3D - 941 1125 IPR042087 -
Trre8g01527 2206 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01527 Trre-Chr8 11627163 11654194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01527 5 2202 Core DNA Replication Machinery Family AT2G27120 67.787 0.0 3036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01527 K02324 - gmx:100812003 3798.82