Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01520 ATGGATTTATATTCTCCTGCCTACCATAACCAAAACCTTATATACTTCCCTCAAAATTCCTTCAATAATTTATTTTCGCAATTAGAAGATTTCACTAATTACTTCAATGATGATATCAACTTCAACAACAACTCACAATTACAAACCAAGGAATCCTTATCCTTGCTAAGCAATGAATCACTACAAGTCTCATCCAACACAACTTATACTCAAGTGATCAATGCAACGCAAACATTATCATCATCATCATCATCATCACCAACGCCGATTAAAGAAGGTTACAATATACCGTTTAGAGGAGTAAGAAAAAGGCCATGGGGTAAATTCGTGGCAGAGATAAGGGATTCAACAAGAAAAGGAGCTAGAGTATGGATTGGAACATTCAACACGGCTCAAGAAGCTGCTTTAGCTTACGATCAAGCTGCTTTTTCAACTAGAGGTTCATCGGCGGTGTTGAATTTTCCAGAAGAAGTGGTTAGAGAATCACTCAAAGAAATGGTTAAAAATTCTAAGCCTTTAGAAGAAGGTACTTCTCCTGTGTTGGCAATCAAGAGCAAACACATCATGAGAAAAAGATCCAATAAGGTTAGTAAAAAGAAAATAAAAAATGATCAAATTCAAATTCAAAAAGAGACAAATTCTAATTCTCAAAATGTGTTGGTGTGTGAAGATTTGGGTGCCGAATATTTGGAGCAACTATTGTACTTGACCTCATAA 717 0.3543 MDLYSPAYHNQNLIYFPQNSFNNLFSQLEDFTNYFNDDINFNNNSQLQTKESLSLLSNESLQVSSNTTYTQVINATQTLSSSSSSSPTPIKEGYNIPFRGVRKRPWGKFVAEIRDSTRKGARVWIGTFNTAQEAALAYDQAAFSTRGSSAVLNFPEEVVRESLKEMVKNSKPLEEGTSPVLAIKSKHIMRKRSNKVSKKKIKNDQIQIQKETNSNSQNVLVCEDLGAEYLEQLLYLTS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01520 238 Gene3D AP2/ERF domain 97 157 IPR036955 GO:0003700|GO:0006355
Trre8g01520 238 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Trre8g01520 238 CDD AP2 98 156 IPR001471 GO:0003700|GO:0006355
Trre8g01520 238 PANTHER DNA-BINDING DOMAIN 60 233 IPR044808 GO:0003700|GO:0009873
Trre8g01520 238 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Trre8g01520 238 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Trre8g01520 238 FunFam Ethylene-responsive transcription factor 2 96 156 - -
Trre8g01520 238 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Trre8g01520 238 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Trre8g01520 238 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01520 Trre-Chr8 11570912 11571628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01520 69 234 AP2-EREBP Transcription Factor Family AT3G23240 51.176 4.86e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g01520 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01520 K14516 - gmx:100779524 205.297