Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01505 ATGTATAGCAATTTCAAGGAGAAAGGAATAGATTACGCGAAACAAGCTGTACAAGAGGATAATGCAGGAAACTACGCAAAAGCGTTTACTTTATACATGAACGCGTTGGAGTATTTCGAAACGCATCTCAAGTACGAGAAAAACCCTAAAATCAAAGAAACTATTACTCAGAGATTTACTGATTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTGGTTGATGGTGGTGGACCGGGACCTGCTTCTAATGGTGATGCTGCTGTTGCGACGAAACCGAAAACGAAGCCGAAGAGTGGCGGTGGTGGTGGTGAGGGAGATGGAGAGGATCCTGAGCAGAGTAAGTTGAGAGCTGGGTTGAATTCGGCTATTGTGAGGGAGAAACCGAATGTGAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCGAAGCAATCGTTGCAGGAAGCGGTTATCTTGCCTGTGAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCTTGGAGGGCGTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATATTTGGCCAAGGCTGTTGCAACTGAAGCGGATTCCACATTTTTCAGTGTTTCTTCATCGGACCTCGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTTGAAATGGCTCGTGAAAGTGCACCTTCCATCATATTTGTTGATGAAATAGATTCTCTATGTGGTACGCGTGGAGAAGGCAACGAGAGTGAGGCTTCAAGGCGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTTGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTAGACCAGGTCCATCTAGGAGATACTCCCCATAATTTGACTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGGTTTTCAGGCTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGGATCCAGAAGGTATGTGGATACCATGTGGACAGAAGCAACAAAATGCAGTACAAATTACAATGCAGGATCTTGCCACACAGGGACTTGCTTCAAAGATCCTCCCACCACCTATATCAAGAATCGATTTTGACAAAGTACTTGCTAGACAAAAGCCTACAGTAAGCAAATCCGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA 1236 0.4369 MYSNFKEKGIDYAKQAVQEDNAGNYAKAFTLYMNALEYFETHLKYEKNPKIKETITQRFTDYLRRAEEIRAVVDGGGPGPASNGDAAVATKPKTKPKSGGGGGEGDGEDPEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQVHLGDTPHNLTESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKDPEGMWIPCGQKQQNAVQITMQDLATQGLASKILPPPISRIDFDKVLARQKPTVSKSDLDVHERFTKEFGEEG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01505 411 SMART smart 2 79 IPR007330 -
Trre8g01505 411 FunFam vacuolar protein sorting-associated protein 4A 281 391 - -
Trre8g01505 411 SMART AAA_5 165 314 IPR003593 GO:0016887
Trre8g01505 411 Pfam ATPase family associated with various cellular activities (AAA) 170 285 IPR003959 GO:0005524|GO:0016887
Trre8g01505 411 Pfam Vps4 C terminal oligomerisation domain 344 408 IPR015415 -
Trre8g01505 411 MobiDBLite consensus disorder prediction 73 113 - -
Trre8g01505 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 362 IPR027417 -
Trre8g01505 411 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Trre8g01505 411 Gene3D - 287 387 - -
Trre8g01505 411 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Trre8g01505 411 Gene3D - 127 285 IPR027417 -
Trre8g01505 411 CDD MIT_VPS4 4 74 IPR045253 -
Trre8g01505 411 PANTHER AAA DOMAIN-CONTAINING 286 409 - -
Trre8g01505 411 SUPERFAMILY MIT domain 2 80 IPR036181 -
Trre8g01505 411 Gene3D - 6 74 - -
Trre8g01505 411 FunFam Vacuolar protein sorting-associated protein 4 128 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01505 Trre-Chr8 11400262 11405816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01505 164 332 Calmodulin-binding Proteins AT3G56690 33.163 9.83e-27 111