Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01504 ATGTATAGCAATTTCAAGGAGAAAGGAATAGATTACGCGAAACAAGCTGTACAAGAGGATAATGCAGGAAACTACGCAAAAGCGTTTACTTTATACATGAACGCGTTGGAGTATTTCGAAACGCATCTCAAGTACGAGAAAAACCCTAAAATCAAAGAAACTATTACTCAGAGATTTACTGATTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTGGTTGATGGTGGTGGACCGGGACCTGCTTCTAATGGTGATGCTGCTGTTGCGACGAAACCGAAAACGAAGCCGAAGAGTGGCGGTGGTGGTGGTGAGGGAGATGGAGAGGATCCTGAGCAGAGTAAGTTGAGAGCTGGGTTGAATTCGGCTATTGTGAGGGAGAAACCGAATGTGAAGTGGAATGATGTTGCTGGGTTGGAAAGTGCGAAGCAATCGTTGCAGGAAGCGGTTATCTTGCCTGTGAAGTTTCCTCAGTTTTTTACTGGTAAAAGACGACCTTGGAGGGCGTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATATTTGGCCAAGGCTGTTGCAACTGAAGCGGATTCCACATTTTTCAGTGTTTCTTCATCGGACCTCGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTTGAAATGGCTCGTGAAAGTGCACCTTCCATCATATTTGTTGATGAAATAGATTCTCTATGTGGTACGCGTGGAGAAGGCAACGAGAGTGAGGCTTCAAGGCGAATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTTGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGACGTTTTGACAAGCGTATATACATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTCCATCTAGGAGATACTCCCCATAATTTGACTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGGTTTTCAGGCTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTGTTCGTAAAACCCAAGATGCCATGTTTTTCTTTAAGGATCCAGAAGGTATGTGGATACCATGTGGACAGAAGCAACAAAATGCAGTACAAATTACAATGCAGGATCTTGCCACACAGGGACTTGCTTCAAAGATCCTCCCACCACCTATATCAAGAATCGATTTTGACAAAGTACTTGCTAGACAAAAGCCTACAGTAAGCAAATCCGACCTTGATGTTCATGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA 1311 0.4371 MYSNFKEKGIDYAKQAVQEDNAGNYAKAFTLYMNALEYFETHLKYEKNPKIKETITQRFTDYLRRAEEIRAVVDGGGPGPASNGDAAVATKPKTKPKSGGGGGEGDGEDPEQSKLRAGLNSAIVREKPNVKWNDVAGLESAKQSLQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKDPEGMWIPCGQKQQNAVQITMQDLATQGLASKILPPPISRIDFDKVLARQKPTVSKSDLDVHERFTKEFGEEG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01504 436 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Trre8g01504 436 SMART smart 2 79 IPR007330 -
Trre8g01504 436 Pfam ATPase family associated with various cellular activities (AAA) 170 299 IPR003959 GO:0005524|GO:0016887
Trre8g01504 436 MobiDBLite consensus disorder prediction 73 113 - -
Trre8g01504 436 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Trre8g01504 436 SUPERFAMILY MIT domain 2 80 IPR036181 -
Trre8g01504 436 CDD RecA-like_VPS4 127 297 - -
Trre8g01504 436 Gene3D - 128 424 IPR027417 -
Trre8g01504 436 Gene3D - 301 416 - -
Trre8g01504 436 SMART AAA_5 165 301 IPR003593 GO:0016887
Trre8g01504 436 Pfam Vps4 C terminal oligomerisation domain 369 433 IPR015415 -
Trre8g01504 436 PANTHER AAA DOMAIN-CONTAINING 16 434 - -
Trre8g01504 436 CDD MIT_VPS4 4 74 IPR045253 -
Trre8g01504 436 ProSitePatterns AAA-protein family signature. 271 290 IPR003960 GO:0005524|GO:0016887
Trre8g01504 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 432 IPR027417 -
Trre8g01504 436 Gene3D - 6 74 - -
Trre8g01504 436 FunFam vacuolar protein sorting-associated protein 4A 301 416 - -
Trre8g01504 436 FunFam Vacuolar protein sorting-associated protein 4 128 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01504 Trre-Chr8 11400262 11405816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01504 164 357 Calmodulin-binding Proteins AT3G56690 36.735 2.04e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01504 K12196 - gmx:100806836 781.941