Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01487 ATGGCCATGATGGAGTTTGATGTAGAGGACAATAATTTCATTGAATGGCTTAAACCATCTAGTTCCTCTCTTTCATATCAAACTTCATCATCATCAATATCATCAACTTCTTCTTCTACTTCTACCACTCAAAATGAAACTATTCAATTCTTTCCTATTTTGAGTGCAAAGTCTTCAAAAGAGGAAGAACATGAAGTACCACAAATTCAGGGTTTTGATGTAGCTTTGCATATTGGATTACCTAGTGACACTAAAGAAAATGATGAGAAGTTTTTCCATGCTAAAGAAGAAGAAAAGCCTTCTAAGAAAACCTTCCAAAGGTTTTGGATACCAACTTCTGCTCAGATCCTTGTTGGACCTATGCAGTTTTCTTGTTCCATATGCAACAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGGAAAGGAGCAGACTCACTTAGAGGAACACAACCAGCTGCAATGCTAAGGCTACCTTGCTATTGTTGTGCTCAAGGTTGCAAGAACAATATCAATCATCCAAGAGCTAAGCCTTTGAAAGATTTTAGAACACTTCAAACTCACTACAAAAGAAAACATGGGACAAAACCATTTATGTGTAGAAAATGTGGGAAAACTTTTGCTGTTAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGTAAGTTTTGGTATTGCACTTGTGGTTCAGATTTTAAACACAAAAGATCTCTCAAAGATCATATTAGATCTTTCGGTAAGGGCCATAGTCAACTTCCGAGTCTTGATGATCGAGCTTTCGAGGAGGATCAGAAGGAATGTGTTACTTGTTCCGATGAAGTTGCTCATACATGA 861 0.3728 MAMMEFDVEDNNFIEWLKPSSSSLSYQTSSSSISSTSSSTSTTQNETIQFFPILSAKSSKEEEHEVPQIQGFDVALHIGLPSDTKENDEKFFHAKEEEKPSKKTFQRFWIPTSAQILVGPMQFSCSICNKTFNRYNNMQMHMWGHGSEFRKGADSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHSQLPSLDDRAFEEDQKECVTCSDEVAHT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01487 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Trre8g01487 286 SUPERFAMILY beta-beta-alpha zinc fingers 114 146 IPR036236 -
Trre8g01487 286 PANTHER ZINC FINGER PROTEIN WIP2 18 273 IPR043584 GO:0003700|GO:0010468
Trre8g01487 286 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Trre8g01487 286 SUPERFAMILY beta-beta-alpha zinc fingers 193 227 IPR036236 -
Trre8g01487 286 Gene3D Classic Zinc Finger 120 145 - -
Trre8g01487 286 FunFam Zinc finger protein WIP2 176 258 - -
Trre8g01487 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 227 IPR013087 -
Trre8g01487 286 SMART c2h2final6 123 145 IPR013087 -
Trre8g01487 286 SMART c2h2final6 170 202 IPR013087 -
Trre8g01487 286 SMART c2h2final6 207 227 IPR013087 -
Trre8g01487 286 Gene3D Classic Zinc Finger 204 264 - -
Trre8g01487 286 Pfam Zinc finger, C2H2 type 123 142 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01487 Trre-Chr8 11288617 11292797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01487 6 278 C2H2 Transcription Factor Family AT1G08290 54.683 5.61e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g01487 zf-C2H2_6 0.00017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01487 - - gmx:100802773 413.69