Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01482 ATGGCTAGCCAAAGAATTGGAGAAATTGGTTTATCTGAGTCAGGACCTTCAAGTCAACATGTCCCTTATGGAGTTCTTCATGGAATTACTACCTCAACATCAACCTTAATGAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTTGAAGAGGCAATTGTTCTTCAAGGAATTAAGATAAGAAATGATGAAGGAAAAGCACCTTTATTCACAAGTAAACCAGCAGCTACACTTGAAATGTTTCCTTCTTGGCCAATTAGATTCCAACAAACACCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAACAGAGTTACAATTTGAAACAGATTCTCCAATAAGTGTAAATGTAAAAGCATCTTCATCAGATCATCATAATAATAACCATGCTTTTGATCAACAACTTCATCAGGAGACAGGAACTGATAATGGCTTAAGAACAGGCACATCACAGAATCAATCAAAAGCTAAATCACATCAAGAAAAGAAAAAAGGAGTTGCTTCCACATCAGAAAAGACACTTGATGCAAAGACACTGAGACGTTTGGCACAAAATAGAGAAGCTGCAAAGAAAAGTCGTCTAAGAAAAAAGGCTTATGTGCAACAGCTAGAGACAAGTAGATTAAGGCTATCCAATCTAGAACAAGACCTTCAAAGAGCACGCTCTCAGGGACTATTCTTGGGTTGTGGTGGTGGCAATATAAGCCCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTTGAAGAAGATCAACGACACTTGGCGGAAATTCGAGCCGCGCTGCAGGCGGCATTACCGGATAATGAACTGAGAGTGATTGTTGACGGATATTTGTATCATTATGATGAACTTTTCCGATTGAAGGGTGTGGCTGTTAAATCAGATGTGTTTCACCTCATTAAAGGCATTTGGGCTTCTCCTGCTGAAAGACCCTTCATTTGGATCGGTGGTTTCAAACCCTCAGAGCTCATCACGATGTTGACACAACAGTTGGAGCCCCTAGCGGACCAGCAAATAGCAGGGATAATGGCTCTACGGCAATCATCACATCAAGCAGAAGAAGCTTTTACTCAAGGCCATGAACAGCTCCACCATGCTATTGTTGACACCATTGCCGGAGGAGCCGTCATTGACGGTGTGCAACAAATGGTTGCCGCCATGGCCAGAATTTCCAACCTTGAAGGATTTGTCCATCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAACTATGCCGAATACTCACAGTACGTCAAGCAGCGCGGTGTTTCCTTGTTATTGGAGAGTATTATGGGCGTCTCCGGGCTCTTAGTTCTCTTTGGGCTTCAAGGCCACGAGAGAACATGATGAACGATGATAATTCATGCCAAACAACCACAGAATTGCAAATGGTTCAACCTTCTCAGAGTCATTTCTCAAGTTTCTGA 1446 0.4253 MASQRIGEIGLSESGPSSQHVPYGVLHGITTSTSTLMNQGSAFDFGELEEAIVLQGIKIRNDEGKAPLFTSKPAATLEMFPSWPIRFQQTPRGGSKSGGESTDSGSTELQFETDSPISVNVKASSSDHHNNNHAFDQQLHQETGTDNGLRTGTSQNQSKAKSHQEKKKGVASTSEKTLDAKTLRRLAQNREAAKKSRLRKKAYVQQLETSRLRLSNLEQDLQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRHLAEIRAALQAALPDNELRVIVDGYLYHYDELFRLKGVAVKSDVFHLIKGIWASPAERPFIWIGGFKPSELITMLTQQLEPLADQQIAGIMALRQSSHQAEEAFTQGHEQLHHAIVDTIAGGAVIDGVQQMVAAMARISNLEGFVHQADNLRQQTLHQLCRILTVRQAARCFLVIGEYYGRLRALSSLWASRPRENMMNDDNSCQTTTELQMVQPSQSHFSSF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01482 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Trre8g01482 481 SMART brlzneu 177 239 IPR004827 GO:0003700|GO:0006355
Trre8g01482 481 FunFam BZIP family transcription factor 180 229 - -
Trre8g01482 481 ProSiteProfiles DOG1 domain profile. 242 450 IPR025422 GO:0006351|GO:0043565
Trre8g01482 481 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g01482 481 Pfam bZIP transcription factor 180 222 IPR004827 GO:0003700|GO:0006355
Trre8g01482 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Trre8g01482 481 MobiDBLite consensus disorder prediction 80 112 - -
Trre8g01482 481 PANTHER TRANSCRIPTION FACTOR TGA9 118 453 - -
Trre8g01482 481 MobiDBLite consensus disorder prediction 160 183 - -
Trre8g01482 481 MobiDBLite consensus disorder prediction 88 112 - -
Trre8g01482 481 Gene3D - 181 227 - -
Trre8g01482 481 Pfam Seed dormancy control 259 334 IPR025422 GO:0006351|GO:0043565
Trre8g01482 481 SUPERFAMILY Leucine zipper domain 181 224 IPR046347 GO:0003700|GO:0006355
Trre8g01482 481 MobiDBLite consensus disorder prediction 143 183 - -
Trre8g01482 481 Coils Coil 200 227 - -
Trre8g01482 481 MobiDBLite consensus disorder prediction 143 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01482 Trre-Chr8 11241384 11248751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01482 128 481 bZIP Transcription Factor Family AT1G08320 64.986 6.42e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g01482 DOG1 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01482 K14431 - gmx:100101904 709.523