Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01481 ATGGCTAGCCAAAGAATTGGAGAAATTGGTTTATCTGAGTCAGGACCTTCAAGTCAACATGTCCCTTATGGAGTTCTTCATGGAATTACTACCTCAACATCAACCTTAATGAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTTGAAGAGGCAATTGTTCTTCAAGGAATTAAGATAAGAAATGATGAAGGAAAAGCACCTTTATTCACAAGTAAACCAGCAGCTACACTTGAAATGTTTCCTTCTTGGCCAATTAGATTCCAACAAACACCAAGAGTTGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAACAGAGTTACAATTTGAAACAGATTCTCCAATAAGTGTAAATGTAAAAGCATCTTCATCAGATCATCATAATAATAACCATGCTTTTGATCAACAACTTCATCAGGAGACAGGAACTGATAATGGCTTAAGAACAGGCACATCACAGAATCAATCAAAAGCTAAATCACATCAAGAAAAGAAAAAAGGAGTTGCTTCCACATCAGAAAAGACACTTGATGCAAAGACACTGAGACGTTTGGCACAAAATAGAGAAGCTGCAAAGAAAAGTCGTCTAAGAAAAAAGGCTTATGTGCAACAGCTAGAGACAAGTAGATTAAGGCTATCCAATCTAGAACAAGACCTTCAAAGAGCACGCTCTCAGGGACTATTCTTGGGTTGTGGTGGTGGCAATATAAGCCCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTTGAAGAAGATCAACGACACTTGGCGGAAATTCGAGCCGCGCTGCAGGCGGCATTACCGGATAATGAACTGAGAGTGATTGTTGACGGATATTTGTATCATTATGATGAACTTTTCCGATTGAAGGGTGTGGCTGTTAAATCAGATGTGTTTCACCTCATTAAAGGCATTTGGGCTTCTCCTGCTGAAAGACCCTTCATTTGGATCGGTGGTTTCAAACCCTCAGAGCTCATCACGATGTTGACACAACAGTTGGAGCCCCTAGCGGACCAGCAAATAGCAGGGATAATGGCTCTACGGCAATCATCACATCAAGCAGAAGAAGCTTTTACTCAAGGCCATGAACAGCTCCACCATGCTATTGTTGACACCATTGCCGGAGGAGCCGTCATTGACGGTGTGCAACAAATGGTTGCCGCCATGGCCAGAATTTCCAACCTTGAAGGATTTGTCCATCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAACTATGCCGAATACTCACAGTACGTCAAGCAGCGCGGTGTTTCCTTGTTATTGGAGAGTATTATGGGCGTCTCCGGGCTCTTAGTTCTCTTTGGGCTTCAAGGCCACGAGAGAACATGATGAACGATGATAATTCATGCCAAACAACCACAGAATTGCAAATGGTTCAACCTTCTCAGAGTCATTTCTCAAGTTTCTGA 1449 0.4251 MASQRIGEIGLSESGPSSQHVPYGVLHGITTSTSTLMNQGSAFDFGELEEAIVLQGIKIRNDEGKAPLFTSKPAATLEMFPSWPIRFQQTPRVGGSKSGGESTDSGSTELQFETDSPISVNVKASSSDHHNNNHAFDQQLHQETGTDNGLRTGTSQNQSKAKSHQEKKKGVASTSEKTLDAKTLRRLAQNREAAKKSRLRKKAYVQQLETSRLRLSNLEQDLQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRHLAEIRAALQAALPDNELRVIVDGYLYHYDELFRLKGVAVKSDVFHLIKGIWASPAERPFIWIGGFKPSELITMLTQQLEPLADQQIAGIMALRQSSHQAEEAFTQGHEQLHHAIVDTIAGGAVIDGVQQMVAAMARISNLEGFVHQADNLRQQTLHQLCRILTVRQAARCFLVIGEYYGRLRALSSLWASRPRENMMNDDNSCQTTTELQMVQPSQSHFSSF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01481 482 Coils Coil 201 228 - -
Trre8g01481 482 SMART brlzneu 178 240 IPR004827 GO:0003700|GO:0006355
Trre8g01481 482 Gene3D - 182 228 - -
Trre8g01481 482 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g01481 482 MobiDBLite consensus disorder prediction 161 184 - -
Trre8g01481 482 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Trre8g01481 482 MobiDBLite consensus disorder prediction 88 113 - -
Trre8g01481 482 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Trre8g01481 482 PANTHER TRANSCRIPTION FACTOR TGA9 120 454 - -
Trre8g01481 482 MobiDBLite consensus disorder prediction 144 184 - -
Trre8g01481 482 FunFam BZIP family transcription factor 181 230 - -
Trre8g01481 482 ProSiteProfiles DOG1 domain profile. 243 451 IPR025422 GO:0006351|GO:0043565
Trre8g01481 482 Pfam bZIP transcription factor 181 223 IPR004827 GO:0003700|GO:0006355
Trre8g01481 482 Pfam Seed dormancy control 260 335 IPR025422 GO:0006351|GO:0043565
Trre8g01481 482 MobiDBLite consensus disorder prediction 144 160 - -
Trre8g01481 482 MobiDBLite consensus disorder prediction 89 113 - -
Trre8g01481 482 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01481 Trre-Chr8 11241384 11248751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01481 129 482 bZIP Transcription Factor Family AT1G08320 64.986 6.58e-167 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g01481 DOG1 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01481 K14431 - gmx:100101904 704.901