Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01480 ATGGCTAGCCAAAGAATTGGAGAAATTGGTTTATCTGAGTCAGGACCTTCAAGTCAACATGTCCCTTATGGAGTTCTTCATGGAATTACTACCTCAACATCAACCTTAATGAATCAAGGGTCAGCTTTTGATTTTGGAGAGCTTGAAGAGGCAATTGTTCTTCAAGGAATTAAGATAAGAAATGATGAAGGAAAAGCACCTTTATTCACAAGTAAACCAGCAGCTACACTTGAAATGTTTCCTTCTTGGCCAATTAGATTCCAACAAACACCAAGAGTTGTAGCTTCTCTCACTTCTCCATCTTTGACTAATCCATATGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAACAGAGTTACAATTTGAAACAGATTCTCCAATAAGTGTAAATGTAAAAGCATCTTCATCAGATCATCATAATAATAACCATGCTTTTGATCAACAACTTCATCAGGAGACAGGAACTGATAATGGCTTAAGAACAGGCACATCACAGAATCAATCAAAAGCTAAATCACATCAAGAAAAGAAAAAAGGAGTTGCTTCCACATCAGAAAAGACACTTGATGCAAAGACACTGAGACGTTTGGCACAAAATAGAGAAGCTGCAAAGAAAAGTCGTCTAAGAAAAAAGGCTTATGTGCAACAGCTAGAGACAAGTAGATTAAGGCTATCCAATCTAGAACAAGACCTTCAAAGAGCACGCTCTCAGGGACTATTCTTGGGTTGTGGTGGTGGCAATATAAGCCCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTTGAAGAAGATCAACGACACTTGGCGGAAATTCGAGCCGCGCTGCAGGCGGCATTACCGGATAATGAACTGAGAGTGATTGTTGACGGATATTTGTATCATTATGATGAACTTTTCCGATTGAAGGGTGTGGCTGTTAAATCAGATGTGTTTCACCTCATTAAAGGCATTTGGGCTTCTCCTGCTGAAAGACCCTTCATTTGGATCGGTGGTTTCAAACCCTCAGAGCTCATCACGATGTTGACACAACAGTTGGAGCCCCTAGCGGACCAGCAAATAGCAGGGATAATGGCTCTACGGCAATCATCACATCAAGCAGAAGAAGCTTTTACTCAAGGCCATGAACAGCTCCACCATGCTATTGTTGACACCATTGCCGGAGGAGCCGTCATTGACGGTGTGCAACAAATGGTTGCCGCCATGGCCAGAATTTCCAACCTTGAAGGATTTGTCCATCAGGCTGATAATTTGAGGCAACAAACTCTTCATCAACTATGCCGAATACTCACAGTACGTCAAGCAGCGCGGTGTTTCCTTGTTATTGGAGAGTATTATGGGCGTCTCCGGGCTCTTAGTTCTCTTTGGGCTTCAAGGCCACGAGAGAACATGATGAACGATGATAATTCATGCCAAACAACCACAGAATTGCAAATGGTTCAACCTTCTCAGAGTCATTTCTCAAGTTTCTGA 1488 0.4241 MASQRIGEIGLSESGPSSQHVPYGVLHGITTSTSTLMNQGSAFDFGELEEAIVLQGIKIRNDEGKAPLFTSKPAATLEMFPSWPIRFQQTPRVVASLTSPSLTNPYGGSKSGGESTDSGSTELQFETDSPISVNVKASSSDHHNNNHAFDQQLHQETGTDNGLRTGTSQNQSKAKSHQEKKKGVASTSEKTLDAKTLRRLAQNREAAKKSRLRKKAYVQQLETSRLRLSNLEQDLQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRHLAEIRAALQAALPDNELRVIVDGYLYHYDELFRLKGVAVKSDVFHLIKGIWASPAERPFIWIGGFKPSELITMLTQQLEPLADQQIAGIMALRQSSHQAEEAFTQGHEQLHHAIVDTIAGGAVIDGVQQMVAAMARISNLEGFVHQADNLRQQTLHQLCRILTVRQAARCFLVIGEYYGRLRALSSLWASRPRENMMNDDNSCQTTTELQMVQPSQSHFSSF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01480 495 Pfam bZIP transcription factor 194 236 IPR004827 GO:0003700|GO:0006355
Trre8g01480 495 SMART brlzneu 191 253 IPR004827 GO:0003700|GO:0006355
Trre8g01480 495 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g01480 495 MobiDBLite consensus disorder prediction 157 197 - -
Trre8g01480 495 Coils Coil 214 241 - -
Trre8g01480 495 FunFam BZIP family transcription factor 194 243 - -
Trre8g01480 495 MobiDBLite consensus disorder prediction 157 173 - -
Trre8g01480 495 Pfam Seed dormancy control 273 348 IPR025422 GO:0006351|GO:0043565
Trre8g01480 495 Gene3D - 195 241 - -
Trre8g01480 495 SUPERFAMILY Leucine zipper domain 195 238 IPR046347 GO:0003700|GO:0006355
Trre8g01480 495 ProSiteProfiles DOG1 domain profile. 256 464 IPR025422 GO:0006351|GO:0043565
Trre8g01480 495 PANTHER TRANSCRIPTION FACTOR TGA9 133 467 - -
Trre8g01480 495 MobiDBLite consensus disorder prediction 98 126 - -
Trre8g01480 495 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 198 213 IPR004827 GO:0003700|GO:0006355
Trre8g01480 495 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 237 IPR004827 GO:0003700|GO:0006355
Trre8g01480 495 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01480 Trre-Chr8 11241384 11248751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01480 142 495 bZIP Transcription Factor Family AT1G08320 64.986 6.41e-167 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g01480 DOG1 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01480 K14431 - gmx:100101904 699.893