Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01473 ATGGCAGAAACGGAGGATCTTCCCAAAACTATCGTACGCCGCGTGGTGAAGGATAAGCTGTCCACTTGCTCCGATGACGGCGACATTGCCGTCCACAAAGACGCTCTTCTCGCATTCTCCGAAAGTGCAAGAATCTTCATTCACTACATTTCCGCTACGGCTAATGATATATGTAAGGAGTCAAAGAGACAAATTATAAATGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACTGAGTTTACTGAATTTGTTAGGCCTTTAAAAGCTTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCAGCGGTGTCAAAGGGAAAAGGAGATGAGAAGGGAAATGAGAAGAAAAAGAAAAGAAAGTTGGAAGAAGGTGAGCCATCTGATAAAAGCAATGGTGGTGGTGATGAGTGA 417 0.4269 MAETEDLPKTIVRRVVKDKLSTCSDDGDIAVHKDALLAFSESARIFIHYISATANDICKESKRQIINAEDVFKALEETEFTEFVRPLKASLEEFRKKNAGKKAAVSKGKGDEKGNEKKKKRKLEEGEPSDKSNGGGDE 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01473 138 MobiDBLite consensus disorder prediction 98 138 - -
Trre8g01473 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 7 75 IPR003958 -
Trre8g01473 138 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 6 130 - -
Trre8g01473 138 Gene3D Histone, subunit A 1 136 IPR009072 GO:0046982
Trre8g01473 138 SUPERFAMILY Histone-fold 7 118 IPR009072 GO:0046982
Trre8g01473 138 FunFam DNA polymerase epsilon subunit 3 1 138 - -
Trre8g01473 138 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01473 Trre-Chr8 11192855 11194310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01473 7 132 CCAAT-HAP3 Transcription Factor Family AT3G53340 31.746 1.62e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre8g01473 CBFD_NFYB_HMF 9.3e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01473 K02326 - gmx:100306382 179.489