Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01461 ATGGAAGATCTCTTCCCTCCTGGTTTTCGTTTCTTCCCTACAGAAGAAGAGCTTGTTAGCTTTTACCTAAACAATAAGCTACAAGGACAAACAAATTCTATAGATAGGGTTATTCCTGTCATTGACATCAATGGTGTAGAACCATGGAACCTCCCAACTCTAGCGGGGGAGCTTTGTCGCGAAGACAAAGAGCAATGGTTTTTCTTTTCGCCGGGGCAAGAAAGAGAAGCAAGAGGAGGGAGACCTAATAGAACAACTGCTTGTGGGTATTGGAAGGCAACTGGTTCACCTGGTTATGTTTATTCTTCGGATAATAAAGTTATTGGAGTGAAGAAAACCATGGTTTTCTATAAAGGGAAAGCTCCTAGTGGAAAGAAAACTAAATGGAAGATGAATGAATACAGAGCCATTCAAGTTTCTAACCAATCAAACACTGCCACACCTCAGTTGAGACGAGAATTCAGTTTGTGCCGAGTGTATGTGATATCAGGAAGTTTTCGAGCATTTGATAGACGCCCATTAGAAAAGGAAAGAGTTAATCAATCTAAGGTTAATCATGAGATTAATCAAAATCCATTTGGTGCCAATCAAGCTATAGAAATGGATGATGAGATTAATCAAAATCCATTTGGTGCCAATCAAGCTATAGAAATGGATGCATCAAGTTCATTTGAAATTTCTCATCTTCACAATGCTCAATTGCAAGAGGATGTAGGAGGTTCAAATAGCACTAATTGGAATGTAAATAACGATGACAATGGTAATGATGTTGATTTCCATGAGCCACTTTGGGAATGGGAGTGTGGAGATTTTAAATTTTAA 822 0.3856 MEDLFPPGFRFFPTEEELVSFYLNNKLQGQTNSIDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGKKTKWKMNEYRAIQVSNQSNTATPQLRREFSLCRVYVISGSFRAFDRRPLEKERVNQSKVNHEINQNPFGANQAIEMDDEINQNPFGANQAIEMDASSSFEISHLHNAQLQEDVGGSNSTNWNVNNDDNGNDVDFHEPLWEWECGDFKF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01461 273 ProSiteProfiles NAC domain profile. 5 162 IPR003441 GO:0003677|GO:0006355
Trre8g01461 273 Gene3D NAC domain 14 165 IPR036093 GO:0003677|GO:0006355
Trre8g01461 273 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 220 - -
Trre8g01461 273 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
Trre8g01461 273 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01461 Trre-Chr8 11108684 11110578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01461 1 200 NAC Transcription Factor Family AT5G22380 61.275 4.52e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g01461 NAM 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01461 - - cam:101497878 392.889