Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01440 ATGTCGGGCACCCGAGCTCCTCCGTCCACCGCCGCTCCCTCCAACCCACCGGACCAGATCATGCAATCAATGAAACGCCAACTCCCTTTCTCTTCCATGAAACCTCCTTTTGTAGCTTCCGGAGATTATCATCGCTTTGCCCCCGACCACCGCCGAAATCTCGACCACGAAACTGAAGCTATCGTCGTTAAGACTCCTCCATTGAAGCGGAAAAGTGAAGCAGCTGATTCTGAAGCTGATTCAGGTGATAGGATGACTCCTGGATCCACTCAAGCAGCCAATAGTCCTTTTCAGACGCCTGTATCTGGAAAGATGGGGAAGGGAGGCAAATCCTCTAGGCTGACAAAATTCAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGAAATAATCTCACCCCTGCGGGTCCATGTCGATATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATAAATTTAATAAAACAAGCAGAGGATGGTATTCTTGATCTAAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGGCTTATAGAGAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTGGATGTTTCAAAACCTGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAATTGAAAATTTAACAATGGAGGAACGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAAGCTGCGGGATCTTAGTGAAGATGAAAATAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGCACCACTTTGGAAGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAGGAGATCAATGGTGTTGATGTTGCACCCAAAATTCCATCCAGTCTAGAAGTTAACATGCATCTATCAACTACTGTGGTCCCAGAGGATAAAGGGAAGGAAATAGAAGTGCAGGCACAAGATGGTGAAGGGCCTAGTTCAGACCCAACCAACTCTCACGACTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACCGATATGTGGAGAACAGAACCCGGAGTTGAATGGAATGAACTCGACGCACTTCAAGAAGATTTTTGTATGGCTCGTGAGCACCCTACAACCCCGAATCATGCTTCAAACATTGGTGAAGCGTCTTCTGCATCCAACCCTACTGTAGGATGA 1395 0.4452 MSGTRAPPSTAAPSNPPDQIMQSMKRQLPFSSMKPPFVASGDYHRFAPDHRRNLDHETEAIVVKTPPLKRKSEAADSEADSGDRMTPGSTQAANSPFQTPVSGKMGKGGKSSRLTKFNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTMEERRLDEQIREMQEKLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKIPSSLEVNMHLSTTVVPEDKGKEIEVQAQDGEGPSSDPTNSHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELDALQEDFCMAREHPTTPNHASNIGEASSASNPTVG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01440 464 MobiDBLite consensus disorder prediction 113 141 - -
Trre8g01440 464 FunFam E2F transcription factor 1 138 211 - -
Trre8g01440 464 PANTHER TRANSCRIPTION FACTOR E2F 83 422 IPR015633 GO:0000978|GO:0006357
Trre8g01440 464 MobiDBLite consensus disorder prediction 1 29 - -
Trre8g01440 464 CDD E2F_DD 220 326 IPR032198 GO:0046983
Trre8g01440 464 Gene3D - 216 326 - -
Trre8g01440 464 Gene3D - 138 211 IPR036388 -
Trre8g01440 464 Coils Coil 222 263 - -
Trre8g01440 464 Pfam E2F transcription factor CC-MB domain 225 325 IPR032198 GO:0046983
Trre8g01440 464 SUPERFAMILY "Winged helix" DNA-binding domain 144 207 IPR036390 -
Trre8g01440 464 Coils Coil 160 180 - -
Trre8g01440 464 SMART E2F_TDP_2 144 209 IPR003316 GO:0005667|GO:0006355
Trre8g01440 464 MobiDBLite consensus disorder prediction 1 141 - -
Trre8g01440 464 MobiDBLite consensus disorder prediction 441 464 - -
Trre8g01440 464 MobiDBLite consensus disorder prediction 83 101 - -
Trre8g01440 464 SUPERFAMILY E2F-DP heterodimerization region 223 326 IPR037241 -
Trre8g01440 464 MobiDBLite consensus disorder prediction 444 464 - -
Trre8g01440 464 MobiDBLite consensus disorder prediction 44 80 - -
Trre8g01440 464 Pfam E2F/DP family winged-helix DNA-binding domain 146 209 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01440 Trre-Chr8 10945836 10951332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01440 19 447 E2F-DP Transcription Factor Family AT5G22220 57.860 3.92e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre8g01440 E2F_CC-MB 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01440 K06620 - gmx:100819817 766.533