Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01431 ATGGATGATGAATTGAATTCCAAAATGGCACCAGACCTAAAAAGTTTTGCTATCATAAATTGGCGAGTGCAACAAATAACTTTGCAGAAAAAACAAAAGATAGGACAAGGTGGTTTTGGCGGTGTTTATAAAGGCTATTTGAAAGACATAGATACCAATGTTGCTATAAAGCGGATATCAAGAGAGTCGAAACAAGGGATTAAGGAATATGCAACTGAAGTGAAGATCATTGGCCAACTTAGGCATAGAAATTTAGTTCAACTAATTGGTTGGTGTCACAAGAAAAAAGACTTTCTCCTTATATATGAATTCTTGCAAAATGGTAGCTTAGATTCTCATCTATACCGCGGCAAAAGCGTATTGACATGGCAAATGAGTTACAACATTGCCATGGACTTGGCTCTAGCACTTCTATATCTTCATGAAGAATGGGAACAATGTGTGCTTCATAGAGACATAAAATCCAGCAACATTATGTTGGACGACAATTTCAATGCTAAGCTTGGTGATTTCGGATTGGCTAGGCTTGTTGATTACGAGAAAGGATCGCAATCGCAAACCACAATTATAGCCGGGACCATGGGATACATAGCTCCTGAATATTTCACAACAGGGAAAGCTACTAAGGAATTAGATATATACAGTTTTGGTATTGTTTCATTGGAATTAGCCAGTGGAAGAAAACCAGTTAATCTTAATGCTAAGGAGGATCAAATGGCTATATTTGATTGGGTTTGGGAGCTTTATAGATTAGGAAGGTTACTTGAAGTAGTTGACACAAAACTTGAGGGTGTAGTCGATGACGAACAAATGGAACGCTTAATCGTTATTGGTCTTTGGTGTGCAAATCCAAATTATTTATTTAGGCCATCTGTAAGACAGGTTATTCAGATGCTTAAACTTGAAGCTCCTTTACCAATTCTCACACCTCCAACAAAGAGTCCAATTATTGGTCTTGTTTCTTCTGCCTCTCCGCCGAGGCTTACACTTCATAACCAGCTAGAATAA 1008 0.379 MDDELNSKMAPDLKSFAIINWRVQQITLQKKQKIGQGGFGGVYKGYLKDIDTNVAIKRISRESKQGIKEYATEVKIIGQLRHRNLVQLIGWCHKKKDFLLIYEFLQNGSLDSHLYRGKSVLTWQMSYNIAMDLALALLYLHEEWEQCVLHRDIKSSNIMLDDNFNAKLGDFGLARLVDYEKGSQSQTTIIAGTMGYIAPEYFTTGKATKELDIYSFGIVSLELASGRKPVNLNAKEDQMAIFDWVWELYRLGRLLEVVDTKLEGVVDDEQMERLIVIGLWCANPNYLFRPSVRQVIQMLKLEAPLPILTPPTKSPIIGLVSSASPPRLTLHNQLE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01431 335 SMART serkin_6 28 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01431 335 ProSiteProfiles Protein kinase domain profile. 28 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01431 335 Pfam Protein kinase domain 29 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01431 335 FunFam Lectin-domain containing receptor kinase A4.3 105 318 - -
Trre8g01431 335 CDD STKc_IRAK 34 300 - -
Trre8g01431 335 Gene3D Phosphorylase Kinase; domain 1 21 104 - -
Trre8g01431 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Trre8g01431 335 PIRSF ILK 5 303 - -
Trre8g01431 335 Gene3D Transferase(Phosphotransferase) domain 1 105 309 - -
Trre8g01431 335 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Trre8g01431 335 FunFam receptor-like protein kinase FERONIA 2 104 - -
Trre8g01431 335 PANTHER - 30 303 - -
Trre8g01431 335 SUPERFAMILY Protein kinase-like (PK-like) 27 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01431 Trre-Chr8 10898974 10899981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01431 32 316 Receptor kinase-like Gene Family AT5G10530 57.639 9.27e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g01431 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01431 - - gmx:100814713 466.848