Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01428 ATGATAGCTATTAAGATTAAAGTTCACATTTTCCTCTTATTTTCCCTTATGATTACAATGTCTTATGGTGAAACTAATCCAAATGATCTCAAAATTCTGAATGATTTCAAGAAAGGGTTGAAGAATCCAGAGCTTCTGAAATGGCCTGATAATGGAAATGATCCATGTGGTTCACCTTCATGGAATTATGTGTACTGTTCTAAAGGTAGAGTTACTCAAATTCAAGCTAAGAATCTTGGTCTTATAGGTTCATTGCCTTCAAATTTTAATCAACTTTCAGAGCTTCAAAATTTAGGTCTTCAAAGAAATAATCTTAGTGGAATGTTACCTAGTTTTAGTGGATTATCTAATTTGCAATTTGCTTATTTGGATTACAATGAATTTGATGCAATCCCTTTAGATTTCTTCAATGGATTGACCAATATTCAGATTTTGTCTTTGGAAGAAAACCCTTTGTTGAATGCTACTAATGGTTGGTCATTTCCTTTGGATTTGAAAAATTCAGCTCAATTGTCATTTCTCTCTTTGGCAAATTGTAATTTGGTTGGTACATTACCTGATTTTCTAGGCACATTATCTTCATTATCAGAATTGAGGCTTTCAGGTAACAGAATTTCAGGTGAAATTCCGGTTAGTTTTGGTCAATCGTCGTTAGAGGTTTTATGGTTGAATGATCAACAAGGTAGTGGAATGACAGGTTCTATCGATGTTATTGCTTCGATGACATTTTTGAGAGTGGTTTGGTTACACGGAAACAAGTTCACCGGAACAATTCCGTCGAATATTGGAAATATCACTTCTCTGCAAGAGCTTAACCTCAATGGTAATCAACTTGTTGGTTTGATTCCAAATTCATTAGCAAATATGGAACTTAAAGCACTTGATTTAAATAATAACATGTTCATGGGTCCAATACCAAAGTTTAAGGCTACAAAAGTATCTTATGATTCTAATTTCTTTTGTCAAACTAAACCTGGTCTTGAATGTGCTTCTGATGTTAATGTCTTGTTGGATTTTCTACATAATGTGAATTATCCATCATTTCTTATTACTAAATGGGTTGGTAATGATCCTTGTGGACAACCATGGTTGGGATTGCGATGCAATAACGCGGAGGAGGTATCGATGATTAATTTGCCTAATCAAAAGCTTAATGGTACTTTGAGTCCTTCACTTGCTATGTTAGTTTCAGTACTTGAAATTAAGCTTGCAGGTAACAATTTAAATGGCAAAGTTCCGAGTAATTTTACTGAATTGAAATCATTGACATTGTTGGATTTGAGTGATAACAATTTTGAACCTCCATTGCCAAATTTTCACGATGGTGTGAAAGTTATCACCGATGGTAACCCTCTTTTTGTTAATCAAACTAGAACGAGTCCCATTCCTATTAGCAGTCCACCGCCTTTAAGTGGTCCACCTTCACCACACATTGTGTTGCCGCCGCCATCTCCATCGCCATCCTCCGGTACTCCACATTCCTCTAGCCAAAGTTCAAGCTCTGATCAATCTAGGAACGTCGAATCAAAGGCTCAACCGAGTAACTCACATAGATTCAAAACAATAGCTATGGTGTCTGGAGTTGCAGCCTTTGCAGTTTTAGCTCTTTTGGTTATTTTTCTCTTAATATGCTGTTGTATGACGAAGAAAAAAGGTTCAATCGATGATTTTAGTTCTGCTATTGTTAAAACTCGAGATCCATCCGATCCAAACCCGATGGTTAAATTAGCTGTGTCAGATAGCAACACTGGGAGCTTATCAACAACAACAGGAACAAGTTCTCTAACTAGTGGCGATACCGGAGGCTATCATGTAATTGACTCTTGTAACCTTGGTATCTCAGTTCAAGTTCTACGAAAGGTTACAAATGATTTTGCTTCGGAAAATGAGCTCGGCCGTGGAGGATTTGGAACTGTTTACAAAGGTGAACTGGACGACGGAACAATTATAGCTGTTAAAAGAATGGAGTGTGGCGTTTTTAGTACTAAAGGAATTGATGAGTTTCAAGCGGAAATTGATGTGCTCTCGAAGGTGCGGCACCGACATTTGGTATCCCTTCTAGGCTATGCCATTGAAGGAAATGAGAGGCTTTTGGTCTACGAATACATGCCTCTTGGTGCTTTAAGCAGACATCTTTTCCATTGGAAAAACCTGAATTTGGACCCTTTGTCTTGGTCACATAGGCTTGCAATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCACAGTCTTGCTCGACAGACCTTCATCCATCGTGATCTCAAGTCTTCGAATATCCTACTCGGAGATGATATTCGAGCCAAAGTTTCTGATTTTGGTTTGGTCAAACTTGCACCAGATGGTGAGAAGTCTATGGCAACAAGACTTGCTGGAACATTTGGATACGTTGCCCCGGAATATGCAGTGATGGGAAAAATCACGACTAAAGTGGATGTGTTCAGCTACGGTGTGGTGTTGATGGAACTTCTGACTGGATTAATGGCTCTTGACGAGAGTCGGCCAGAGGAAAACCGATACTTAGCCGAATGGTTTTGGCAAATCAAATCAGACAAAGAAAAGCTTATGGCTGCTATCGATCCAGCACTTGAAGTAAGCGAAGAGACTTTCGAGAGTATTTACACTGTAGCTGAACTTGCCGGACATTGCACTGCTAGGGAAGCAAATCATAGGCCAGATATGGGATATGCAGTCAAGGTGCTGTCGGAATTAGTAGAGAAATGGAGACCGGTTGATGAAGATTTCGATTATAGCAGTGGCGTTGACTTCGGTCAACCGCTTCCGCAATTGTTGAAAATTTGGAAGGAAGCAGACAGCAAAGATGTAAGTTATACAAGTCTTGAAAATAGTAAAGGAAGTATACCAAATAAGCCTCCTGGTTTTGCAGAATCTTTTGCTTCTTCTGATGCTAGATGA 2916 0.3885 MIAIKIKVHIFLLFSLMITMSYGETNPNDLKILNDFKKGLKNPELLKWPDNGNDPCGSPSWNYVYCSKGRVTQIQAKNLGLIGSLPSNFNQLSELQNLGLQRNNLSGMLPSFSGLSNLQFAYLDYNEFDAIPLDFFNGLTNIQILSLEENPLLNATNGWSFPLDLKNSAQLSFLSLANCNLVGTLPDFLGTLSSLSELRLSGNRISGEIPVSFGQSSLEVLWLNDQQGSGMTGSIDVIASMTFLRVVWLHGNKFTGTIPSNIGNITSLQELNLNGNQLVGLIPNSLANMELKALDLNNNMFMGPIPKFKATKVSYDSNFFCQTKPGLECASDVNVLLDFLHNVNYPSFLITKWVGNDPCGQPWLGLRCNNAEEVSMINLPNQKLNGTLSPSLAMLVSVLEIKLAGNNLNGKVPSNFTELKSLTLLDLSDNNFEPPLPNFHDGVKVITDGNPLFVNQTRTSPIPISSPPPLSGPPSPHIVLPPPSPSPSSGTPHSSSQSSSSDQSRNVESKAQPSNSHRFKTIAMVSGVAAFAVLALLVIFLLICCCMTKKKGSIDDFSSAIVKTRDPSDPNPMVKLAVSDSNTGSLSTTTGTSSLTSGDTGGYHVIDSCNLGISVQVLRKVTNDFASENELGRGGFGTVYKGELDDGTIIAVKRMECGVFSTKGIDEFQAEIDVLSKVRHRHLVSLLGYAIEGNERLLVYEYMPLGALSRHLFHWKNLNLDPLSWSHRLAIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDIRAKVSDFGLVKLAPDGEKSMATRLAGTFGYVAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEENRYLAEWFWQIKSDKEKLMAAIDPALEVSEETFESIYTVAELAGHCTAREANHRPDMGYAVKVLSELVEKWRPVDEDFDYSSGVDFGQPLPQLLKIWKEADSKDVSYTSLENSKGSIPNKPPGFAESFASSDAR 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01428 971 MobiDBLite consensus disorder prediction 490 515 - -
Trre8g01428 971 FunFam Leucine-rich repeat receptor-like kinase 331 456 - -
Trre8g01428 971 SMART LRR_typ_2 92 114 IPR003591 -
Trre8g01428 971 SMART LRR_typ_2 115 138 IPR003591 -
Trre8g01428 971 SMART LRR_typ_2 265 288 IPR003591 -
Trre8g01428 971 SMART LRR_typ_2 419 441 IPR003591 -
Trre8g01428 971 SMART LRR_typ_2 192 216 IPR003591 -
Trre8g01428 971 MobiDBLite consensus disorder prediction 457 515 - -
Trre8g01428 971 Gene3D Ribonuclease Inhibitor 27 326 IPR032675 -
Trre8g01428 971 Gene3D Phosphorylase Kinase; domain 1 589 702 - -
Trre8g01428 971 PANTHER OSJNBA0070M12.3 PROTEIN 11 971 - -
Trre8g01428 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Trre8g01428 971 SUPERFAMILY L domain-like 330 439 - -
Trre8g01428 971 SUPERFAMILY L domain-like 25 308 - -
Trre8g01428 971 MobiDBLite consensus disorder prediction 462 489 - -
Trre8g01428 971 Pfam Leucine rich repeat N-terminal domain 330 369 IPR013210 -
Trre8g01428 971 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Trre8g01428 971 FunFam Receptor-like kinase TMK4 27 326 - -
Trre8g01428 971 SUPERFAMILY Protein kinase-like (PK-like) 607 901 IPR011009 -
Trre8g01428 971 ProSiteProfiles Protein kinase domain profile. 625 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01428 971 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Trre8g01428 971 Pfam Protein tyrosine and serine/threonine kinase 628 897 IPR001245 GO:0004672|GO:0006468
Trre8g01428 971 FunFam receptor protein kinase TMK1 703 920 - -
Trre8g01428 971 Gene3D Transferase(Phosphotransferase) domain 1 703 918 - -
Trre8g01428 971 CDD STKc_IRAK 631 904 - -
Trre8g01428 971 MobiDBLite consensus disorder prediction 946 971 - -
Trre8g01428 971 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Trre8g01428 971 SMART serkin_6 625 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g01428 971 FunFam receptor protein kinase TMK1 587 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01428 Trre-Chr8 10879255 10882315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01428 70 901 Receptor kinase-like Gene Family AT5G49660 28.990 1.22e-82 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre8g01428 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01428 - - cam:101505581 1456.81