Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01422 ATGGGAACGTACTTTCATGGAAACAGCAACAGTTCTGAAATCCAACAACCGTCGGCAGAAGGTTTACGGACACTTTACCTTATGAATCCAAACTACGTACCTTATTCTCAGGAAACTCAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCAATACTTCTCCTCACGCGCTTAATCTTGTTAAGTTCCCTCACGCGCCTTCATCTTTCAATCAACACCACTTACTTGGAGTTACTGTTCCACCATCCAATTTTCTTGGATCCAACACAGCCGACACTCCCTCACAACAGTACCAAGTTACCGGCTTCCATCCCTTTGCATCGTCGGTGACCGCAACTCCTCCTCCCCAGTATAACCTGTGGGGAGTAGGATCAGGTAGTTTAGTACCTGATCAATCTGTCATGGCGACAGCAACAACTACTTCAACTAATAGATCGGAGTCTGTTGTCACTGTCGCCGTGACAGCACATGATGCGGCGGAGTTTCCACCGCCGCATATTGGTTTTCAGAGGCCAGTTTATCAGCGCGGATTGTCTCTGAGTCTTTCGTCACAACAAACACCTTACCGGTCAGTTTCTAGAGAAATCGAGGTATCTCCGGGAAGCCATGGAGGCGGAGAGAACAGTGGCGTTTCGACCATGCATGGTGTTATTTTCGGATCGAAGTATTTGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAAGGAATCATGAAAGGAGAATCTGGTGAAGGAGATAATAGTAATAATGAGAATAAAGAGAAGAGGAAAGTGAATATTGAAGCAAGTTCAAGTGGTGGAAGAGAAAACGATATTGGAGGAAAACAAGTTCAAGTAGCTGAACTAAGTACTGCACAAAGACAAGAACTTCAAATGAAGAAGTCAAAGCTTGTTAGCATGCTTGATGAGGTAGATATACGGTACAAACAATACCACCATCAAATGCAAGGTGTGATATCATCATTTGAACAAGCAGCAGGATATGGAGCAGCAAAGTCTTACACATCCCTTGCTTTAAAGACAATCTCAAAGCAATTTAGAAGTCTTAAAGATGCAATTTCTTCACAAATTAAGTCAACTAGCAAGACTTTGGGTGAAGATGATTGCTTAGGAGTTAAGTTATTAGAAGGCTCTAGGCTTAGGTTTGTCGATCATCATCTCCGACAACAACGTGCACTACAACAACTCGGAATGATTCAGAGCAATGCTTGGAGGCCTCAAAGAGGCCTGCCGGAGCGAGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCCAAAGACTCAGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTCGGAGTCAGGTGTCTAACTGGTTTATAAATGCTCGAGTTCGGTTATGGAAACCAATGGTTGAAGAAATGTACTTAGAAGAAACCAAGGAGCAAGAACAGAAAAATGACTCAAATGATAACACAAATAATATATCCAAAGATTCAAGCAAAGAGTTGTGGTCAGCAAATAATGCTACACAAGATTCAACACCCACAAAACTTGAAAGCTTCAACAACCAAAACACTTCTCCAACTGATATTTCAAATTCCCATAATAATTCATTGTCAGCATCCAACACAAAGTTTGATGTTGAAAGAAATCATGACAAAAATGGATACCCTTTAATGAGTGGAAATGAAAATCATCATGGTGATGGTTATGGATCATTCTCAATGGAAGATATTGGAAGGTTTAATGTTAGTGACCAATTGGCTCCAAGGTTTCATGGAAATGGAGTTTCTCTAACTCTTGGATTACCTCATAATGAAAATCTCTCTTTCTCTTCCACTCAACATGGATTTCTCTCTCAGAATTTACATATGGGAGAGAATGAAAATGAGTTTTGTGCCATTAATACTACTCCACCTTCATCTCATTCAGGAACAAGTTATGAGAGTATTGATATTCAAAACAGAAAGAGGTTTGCAGCTGCTCAATTGTTGAGAAATTTTGTGAACTAA 2019 0.4076 MGTYFHGNSNSSEIQQPSAEGLRTLYLMNPNYVPYSQETQNPTQNMLFANPNATNTSPHALNLVKFPHAPSSFNQHHLLGVTVPPSNFLGSNTADTPSQQYQVTGFHPFASSVTATPPPQYNLWGVGSGSLVPDQSVMATATTTSTNRSESVVTVAVTAHDAAEFPPPHIGFQRPVYQRGLSLSLSSQQTPYRSVSREIEVSPGSHGGGENSGVSTMHGVIFGSKYLKVAQELLDEVVNVDKGIMKGESGEGDNSNNENKEKRKVNIEASSSGGRENDIGGKQVQVAELSTAQRQELQMKKSKLVSMLDEVDIRYKQYHHQMQGVISSFEQAAGYGAAKSYTSLALKTISKQFRSLKDAISSQIKSTSKTLGEDDCLGVKLLEGSRLRFVDHHLRQQRALQQLGMIQSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEQKNDSNDNTNNISKDSSKELWSANNATQDSTPTKLESFNNQNTSPTDISNSHNNSLSASNTKFDVERNHDKNGYPLMSGNENHHGDGYGSFSMEDIGRFNVSDQLAPRFHGNGVSLTLGLPHNENLSFSSTQHGFLSQNLHMGENENEFCAINTTPPSSHSGTSYESIDIQNRKRFAAAQLLRNFVN 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01422 672 ProSiteProfiles 'Homeobox' domain profile. 408 471 IPR001356 GO:0003677
Trre8g01422 672 SMART prehox3 215 362 IPR006563 -
Trre8g01422 672 FunFam BEL1-like homeodomain protein 9 414 476 - -
Trre8g01422 672 Gene3D - 414 493 - -
Trre8g01422 672 MobiDBLite consensus disorder prediction 490 547 - -
Trre8g01422 672 MobiDBLite consensus disorder prediction 244 279 - -
Trre8g01422 672 CDD homeodomain 411 472 IPR001356 GO:0003677
Trre8g01422 672 MobiDBLite consensus disorder prediction 244 269 - -
Trre8g01422 672 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 496 - -
Trre8g01422 672 SMART HOX_1 411 475 IPR001356 GO:0003677
Trre8g01422 672 Pfam Associated with HOX 220 361 IPR006563 -
Trre8g01422 672 MobiDBLite consensus disorder prediction 480 574 - -
Trre8g01422 672 SUPERFAMILY Homeodomain-like 412 477 IPR009057 -
Trre8g01422 672 Pfam Homeobox KN domain 428 467 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01422 Trre-Chr8 10763038 10768628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01422 1 671 Homeobox Transcription Factor Family AT2G35940 40.434 2.09e-128 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre8g01422 POX 3.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01422 - - mtr:25492199 960.674