Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01420 ATGGATGAAAATGAAATTCCTCCATATTTTTTGTGTCCAATTTCATTTCAAATCATGAAAGAACCCATGACAACCGTGACCGGAATAACATATGACCGAGAAAGCATCGAAAAATGGTTGTCGAAGGCCAAGATTTGTGTTTGTCCAGTTACAAACCAATCACTACCAAGAGGTACACAATATTTGACTCCAAATCACACACTTCAAAGGCTTATCAAAGCATGGATTTCATCAAATGAAGCCAAAGGTGTTGGTGAGGATCAAGTTTCTTCTCCTAAATCTCCTATCAATAGAATCCATCTTCAAAAGCTTGTCAAGAATCTTGATGTTCCTCATTGTTATCAAGCATCAATGGAGAAGATTCATGATCTTGCTAAACAAGGTGAGAGAAATAGAACATGCATGGTTGAAGTAGGTGTAACAAAAGCTATGGTTATGGTCATTAAAAGGAATTTCAAAGAAGGAAACACCAATGGTTTAGAAGAAGCTTTGAAGATTATTCGTCTTTTGTGGCATGAAGCAATGATGAAAAACAAGATCAAGCATTTGATTAGAGAAAACATGGATTTCATCAACTCTTTGACTTGGATTTTGAAAATTCATATGGATAACAACAATTTCAACATGATAAATGAAGTTATGCCATTATTAAAGTTGACTATTGATGTTGTTGATTCAACCCTTTTAGGAAATTTAAACATTGAATTCTTTAGAGAAATCGTGAGAGTAATTCGAAAGCGAGGATTATTTTCTAAACAAGCTATTAAATCGGCTTTACATGTTCTTCTAGACGCGTGCCCTTTGGGTAGAAACCGAACAAGGATCGTGGAAGCGGGTGGAGTAACCGAGCTTGTTGAACTCGAGCTTGAAAAACCCGAGAAGAGCATGACCGAGCTTGTATTCAACCTTTTGGCACATTTGTGCTCGTGTGCGGAAGGAAGGGAACAATTTTTGCGACACGCGGCAGGTTTAGCGATGGTCTCGAAAAGGATTTTGAGGGTGTCATCCGCAACCGATGATCTAGCTATTCAAATAATTTCAGTGATTGCAAAGTATTCAACTTCGAAAGAGATTGTTTTAGAGATGTTGAGGGTTGGAACGGTTTCGAAGCTTTGCATGGTAATGCAAGCAGATTGTGCTTCTTATTTGAAAGAGAAAGCTAGAGGCATACTTAGGTTACATTCAACTTCTTGGAATAATTCTCCTTGCATACAAGTATATTTGTTAACTAGGCACCAAAGGTGA 1245 0.3751 MDENEIPPYFLCPISFQIMKEPMTTVTGITYDRESIEKWLSKAKICVCPVTNQSLPRGTQYLTPNHTLQRLIKAWISSNEAKGVGEDQVSSPKSPINRIHLQKLVKNLDVPHCYQASMEKIHDLAKQGERNRTCMVEVGVTKAMVMVIKRNFKEGNTNGLEEALKIIRLLWHEAMMKNKIKHLIRENMDFINSLTWILKIHMDNNNFNMINEVMPLLKLTIDVVDSTLLGNLNIEFFREIVRVIRKRGLFSKQAIKSALHVLLDACPLGRNRTRIVEAGGVTELVELELEKPEKSMTELVFNLLAHLCSCAEGREQFLRHAAGLAMVSKRILRVSSATDDLAIQIISVIAKYSTSKEIVLEMLRVGTVSKLCMVMQADCASYLKEKARGILRLHSTSWNNSPCIQVYLLTRHQR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01420 414 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Trre8g01420 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Trre8g01420 414 CDD RING-Ubox_PUB 7 55 IPR045210 -
Trre8g01420 414 Gene3D - 100 406 IPR011989 -
Trre8g01420 414 PANTHER WDSAM1 PROTEIN 4 405 IPR045185 GO:0061630
Trre8g01420 414 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Trre8g01420 414 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Trre8g01420 414 SUPERFAMILY ARM repeat 115 391 IPR016024 -
Trre8g01420 414 SUPERFAMILY RING/U-box 4 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01420 Trre-Chr8 10743434 10744678 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01420 2 411 U-box Gene Family AT3G11840 37.086 4.69e-89 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01420 - - gmx:100811293 551.592