Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01417 ATGAATGAAATTGAAATCCCTCCATATTTTTTGTGTCCAATTTCATTTCAAATTATGAAAGCTCCTGTTTCAACAGTGACTGGAATAACATATGACAGAGAAAGCATCGAAAAATGGTTAATGAAAGCCAAAAATTGTGTGTGTCCACTAACACACCAATCACTACCAAGAAACACAAAATATTTGACTCCAAATCACTCACTTCAAAGGCTAATAATAGCATGGAATTCATCAAATGAAGCCAAAGGTGTTGATGATGATCAAATTTCATCTCCAAAATCTCCTATCAATAGACTCCATCTTCAGAACCTTGTCAAGAATCTTGATGTTCCTCGTTGTTATCTAGCATCAATGGAGAAGATTCATGAACTTGCTAAACTGAGTGAGAGAAACAGAACATGCATGGTTGAAATTGGCGTAACTAAGGTTATGGTTATGGTTATTAAAAAGAATTTCAAAGAAGGAAATACCAATGGTTTAGAAGAAGCTTTGAAGATATAA 501 0.3393 MNEIEIPPYFLCPISFQIMKAPVSTVTGITYDRESIEKWLMKAKNCVCPLTHQSLPRNTKYLTPNHSLQRLIIAWNSSNEAKGVDDDQISSPKSPINRLHLQNLVKNLDVPRCYLASMEKIHELAKLSERNRTCMVEIGVTKVMVMVIKKNFKEGNTNGLEEALKI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01417 166 PANTHER WDSAM1 PROTEIN 3 165 IPR045185 GO:0061630
Trre8g01417 166 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Trre8g01417 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Trre8g01417 166 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Trre8g01417 166 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Trre8g01417 166 SUPERFAMILY RING/U-box 4 83 - -
Trre8g01417 166 CDD RING-Ubox_PUB 7 59 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01417 Trre-Chr8 10694801 10695698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01417 3 166 U-box Gene Family AT3G11840 43.023 7.86e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01417 - - gmx:100787426 209.149