Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01411 ATGGGTGTCTCAGGGAAATGGATTAGAGCATTAGTTGGTCTAAAGAAATCAGAAAAGACCGGGTCTTCAGAGAAGGATGGGAATAAGGATAGCAAGTCACGCCATCGGAGAAAGCATTCCATCGAAATCGACAATAGCAAACTTCAAAATGAGCTTGATGATGTTGAAGCTACACCTATTGGAGATGCAGATAATGCAATTCCCCAATCAAACCTTGATGTTCATTATTCTCCTTCTACTTCACAACAAGCACATGATACTGGACATAATCATCAAATATCAAGAGAAGAATGGGCTGCGATATGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCGCTACGAGCTTTGAAAGGACTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGTCATTGGAAAGTCAAACAGAACAACAAAAACTTCAGCAACAGCTTGTAAACGAAGCCCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAATCCAAAATATTAAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCGCATCAGTGGCAGGCAGGATCAAGGCAGCAGGCTGTTTCTTCAGGGTTTGAACCTGATAAAAGTAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGGCCTTGGGAGAATCGTTTTCTTGACATAAACACGAAAGATGGAGGAAAGGTAGACGAAGATGATGTTATGGATGGTAGAAATGGAATCAGACCTCAGTTCAGGTCTACTAACACGAAATCAAATCCTCCAAATATTCATCCAAGTGTTGCCGGTCATAAAACTGGCCCGTCTGTCTCTGATGGCTGTGATTCTTCTTCCACTGGCAAGTCAGCAGGTTTACTTGAGACATCGAACACACAAGCTGTTAAACCAAAATCTAATACAAATGTTCAAAATCCCGTTGAAGAAACCAACTCAAAATCTGGATTTCCAAGATCTCAAAGTAATCCAAAGGAGAGAAAGTCACAGGTAGATAAACAGGCAAAAAAGCGATTATCACTTCCTAACAATGGGGTTGGTTCCGGGGCTCAAACGGCCAAATATCCTACCAGATCTAACGTGAAAGGGACACGTAGCACGCAAAAGCCTATAAGGGATAAGCCTAAGCCTAAGCCTAAGATCAATGGAGGCGAGGATGTGAGTCTTGCTCAATCTGTTTCACAGCCCACAGTCGTATAA 1332 0.4377 MGVSGKWIRALVGLKKSEKTGSSEKDGNKDSKSRHRRKHSIEIDNSKLQNELDDVEATPIGDADNAIPQSNLDVHYSPSTSQQAHDTGHNHQISREEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLSLESQTEQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQSKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINTKDGGKVDEDDVMDGRNGIRPQFRSTNTKSNPPNIHPSVAGHKTGPSVSDGCDSSSTGKSAGLLETSNTQAVKPKSNTNVQNPVEETNSKSGFPRSQSNPKERKSQVDKQAKKRLSLPNNGVGSGAQTAKYPTRSNVKGTRSTQKPIRDKPKPKPKINGGEDVSLAQSVSQPTVV 443
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01411 443 Gene3D - 97 138 - -
Trre8g01411 443 MobiDBLite consensus disorder prediction 411 425 - -
Trre8g01411 443 MobiDBLite consensus disorder prediction 388 410 - -
Trre8g01411 443 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Trre8g01411 443 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Trre8g01411 443 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Trre8g01411 443 MobiDBLite consensus disorder prediction 18 51 - -
Trre8g01411 443 MobiDBLite consensus disorder prediction 267 285 - -
Trre8g01411 443 MobiDBLite consensus disorder prediction 70 88 - -
Trre8g01411 443 FunFam IQ-domain 11 95 146 - -
Trre8g01411 443 MobiDBLite consensus disorder prediction 14 91 - -
Trre8g01411 443 MobiDBLite consensus disorder prediction 267 443 - -
Trre8g01411 443 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Trre8g01411 443 MobiDBLite consensus disorder prediction 316 368 - -
Trre8g01411 443 SMART iq_5 95 117 IPR000048 GO:0005515
Trre8g01411 443 SMART iq_5 118 139 IPR000048 GO:0005515
Trre8g01411 443 MobiDBLite consensus disorder prediction 288 305 - -
Trre8g01411 443 Coils Coil 38 58 - -
Trre8g01411 443 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre8g01411 Trre-Chr8 10614487 10620167 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01411 1 418 IQD Protein Family AT3G22190 54.118 1.17e-118 351
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01411 - - tpra:123923158 760.755