Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01409 ATGTTTGGAAGAGCACCCAAGAAAAGTGACAGTACGAGGTACTATGAAATCTTAGGTGTATCTAAGAATGCTTCTCCGGATGATTTGAAAAAAGCTTACAAAAAAGCTGCTATTAAGAATCATCCTGATAAGGGTGGTGATCCTGAGAAGTTCAAGGAGCTTGCACAAGCTTATGAGGTTCTGAATGATCCTGAGAAGCGTGAGATATATGATACATATGGTGAGGATGCACTTAAGGAAGGAATGGGTGGTGGAGGTGGTGGTGGACATGATCCATTTGACATCTTCTCGTCTTTCTTTGGTGGTGGTGGTAGTAGCCGAGGAGGGCGAAGGCAGAGACGCGGAGAAGATGTTGTTCACCCTCTCAAGGTCTCTTTGGAGGACCTTTACCTTGGGACATCTAAGAAGCTTTCTCTCTCGAGGAATGTGTTGTGCTCGAAGTGCAGCGGCAAAGGTTCTAAGTCTGGTGCTTCCATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATCAGGCACCTTGGTCCATCAATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACCGGTGAAACCATCAATGATAAAGATCGCTGCCCACAGTGTAAGGGAGAGAAGGTTGTACAAGAGAAGAAAGTACTTGAAGTTCATGTGGAGAAGGGAATGCAGAACAGCCAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCAGACACAGTTACTGGGGATATTGTATTTGTGCTTCAGCAGAAAGAACATCCCAAGTTCAAAAGAAAGAGCGAAGACCTTTTTGTAGAGCACACATTGTCCCTCACTGAGGCTTTATGTGGTTTCCAATTTGTGTTGACTCACTTGGATGGCCGCCAACTCCTTATCAAATCAAATCCCGGAGAAGTTGTCAAGCCTGATTCATTCAAAGCTATTAATGACGAGGGAATGCCGATCTACCAGAGGCCGTTTATGAAGGGCAAGCTTTACATTCACTTTACTGTGGAATTCCCTGAGACTTTAACTCCTGATCAAGTGAAGGGTTTGGAGGCTGTTCTTCCTGCTAAACCTTCATCACAGTTGACAGACATGGAGCTGGACGAGTGCGAGGAAACTACACTTCATGATGTCAATATGGAAGAGGAGACGAGAAGGAAACAGCAGCAACAACAACAGGAAGCATATGATGAAGATGATGATATGCCTGGTGGAGCACAGAGGGTACAGTGCGCCCAGCAGTAG 1248 0.4543 MFGRAPKKSDSTRYYEILGVSKNASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLNDPEKREIYDTYGEDALKEGMGGGGGGGHDPFDIFSSFFGGGGSSRGGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVHVEKGMQNSQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKSEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSFKAINDEGMPIYQRPFMKGKLYIHFTVEFPETLTPDQVKGLEAVLPAKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQQQQEAYDEDDDMPGGAQRVQCAQQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01409 415 CDD DnaJ 14 63 IPR001623 -
Trre8g01409 415 Pfam DnaJ C terminal domain 119 340 IPR002939 -
Trre8g01409 415 Pfam DnaJ domain 14 71 IPR001623 -
Trre8g01409 415 Gene3D DnaJ domain 10 109 IPR036869 -
Trre8g01409 415 MobiDBLite consensus disorder prediction 376 415 - -
Trre8g01409 415 FunFam Chaperone protein dnaJ 3 212 252 - -
Trre8g01409 415 MobiDBLite consensus disorder prediction 376 395 - -
Trre8g01409 415 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 142 214 IPR036410 -
Trre8g01409 415 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Trre8g01409 415 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 396 IPR044713 GO:0006457|GO:0030544
Trre8g01409 415 Gene3D - 145 211 - -
Trre8g01409 415 ProSiteProfiles Zinc finger CR-type profile. 132 216 IPR001305 GO:0031072|GO:0051082
Trre8g01409 415 FunFam DnaJ subfamily A member 2 259 341 - -
Trre8g01409 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 111 269 IPR008971 GO:0006457|GO:0051082
Trre8g01409 415 Gene3D - 259 341 - -
Trre8g01409 415 CDD DnaJ_zf 145 211 IPR001305 GO:0031072|GO:0051082
Trre8g01409 415 Pfam DnaJ central domain 145 211 IPR001305 GO:0031072|GO:0051082
Trre8g01409 415 Gene3D - 110 257 - -
Trre8g01409 415 PRINTS DnaJ domain signature 46 66 IPR001623 -
Trre8g01409 415 PRINTS DnaJ domain signature 66 85 IPR001623 -
Trre8g01409 415 PRINTS DnaJ domain signature 15 33 IPR001623 -
Trre8g01409 415 FunFam dnaJ protein homolog 10 111 - -
Trre8g01409 415 FunFam DnaJ subfamily A member 2 145 211 - -
Trre8g01409 415 SUPERFAMILY HSP40/DnaJ peptide-binding domain 262 349 IPR008971 GO:0006457|GO:0051082
Trre8g01409 415 CDD DnaJ_C 116 343 - -
Trre8g01409 415 SMART dnaj_3 12 66 IPR001623 -
Trre8g01409 415 Hamap Chaperone protein DnaJ [dnaJ]. 10 366 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre8g01409 415 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Trre8g01409 415 SUPERFAMILY Chaperone J-domain 8 107 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01409 Trre-Chr8 10573441 10576458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01409 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 8.01e-12 65.1