Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01402 ATGTCAATGGACATGATGGGAACTGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACAATTCTTGCGGTTAATGTTCCATACAGCAGTATGCTAACCATAGTGACAGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGTGGCAGCATCACTTCAACCATTTTCTCCTCCTCAACTGCCTCAGAAACAGCACATAATCCTTGAAGAACCAAGCAGCAAAGAAATGGGTTCATCTTCAAAATGCAACAAAATAGCATCATTCGAGGCAGTAGTTGAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGCGGCTTTCAGTTCAGCAGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAACAAGCAAAATTGGACAATGCTGAAGGAACTCATGAAAAGACTAATGGATTCTACTGA 540 0.4093 MSMDMMGTERVCYVHCNFCNTILAVNVPYSSMLTIVTVRCGHCANLLSVNMVAASLQPFSPPQLPQKQHIILEEPSSKEMGSSSKCNKIASFEAVVEHEQPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHRAAFSSAAKNWAHFPHIHFGKQQAKLDNAEGTHEKTNGFY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01402 179 CDD HMG-box_SF 114 150 - -
Trre8g01402 179 SUPERFAMILY HMG-box 105 154 IPR036910 -
Trre8g01402 179 Pfam YABBY protein 8 159 IPR006780 GO:0007275
Trre8g01402 179 PANTHER PROTEIN YABBY 6-RELATED 3 164 IPR006780 GO:0007275
Trre8g01402 179 Gene3D High mobility group box domain 110 174 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01402 Trre-Chr8 10536945 10543591 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01402 1 179 C2C2-YABBY Transcription Factor Family AT1G08465 56.085 2.59e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Trre8g01402 YABBY 3.1e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01402 K25796 - gmx:100500091 272.707